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                   R2018a (9.4.0.813654) 64-bit (glnxa64)
                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :66
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click here.] 
The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
psst_OC starting job nrtchl at 02-Jan-2026 10:40:13 on oc3-hba

usesats =
          2.00          3.00         18.00         19.00         20.00
Looking for data in range:
22-Dec-2025 23:40:13
01-Jan-2026 23:40:13
ans =
  32x18 char array
    'Syd-Hob  Syd-Hob  '
    'SNSW     SNSW     '
    'Forster  SNSW     '
    'Bris3_   Brisbane2'
    'Brisbane2Brisbane2'
    'Bris-Syd Bris-Syd '
    'LordHoweSLordHoweS'
    'Coffs    Coffs    '
    'Brisbane Brisbane '
    'EGAB     RechEyre '
    'TasE     TasE     '
    'Adelaide Adelaide '
    'Tas      Tas      '
    'CLeeu    CLeeu    '
    'DonPer   DonPer   '
    'Rottnest Rottnest '
    'SAgulfs  SAgulfs  '
    'Ningaloo Ningaloo '
    'Perth    Perth    '
    'NWS      NWS      '
    'AlbEsp   AlbEsp   '
    'RechEyre RechEyre '
    'SGBR     SGBR     '
    'CGBR     CGBR     '
    'NGBR     NGBR     '
    'TimorP   Timor    '
    'XmasI    XmasI    '
    'KimberleyKimberley'
    'Rowley   Kimberley'
    'Dongara  Perth    '
    'Norfolk  LordHoweS'
    'GoC      GOC      '
first read
diroutcomp =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/'
indexcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat'
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 30-Dec-2025 05:20:00
ditching chlpcgood for 4 files with chl for after 28-Dec-2025 05:20:00
flcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache_v6.mat'
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/snpp/1d/catalog.xml
imos-srs/oc/snpp/1d/2025/12/V20251231.L2OC_VIIRS.aust.chl_oci.nc         
                                                                         
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/jpss1/1d/catalog.xml
imos-srs/oc/jpss1/1d/2025/12/J20251231.L2OC_VIIRS.aust.chl_oci.nc         
                                                                          
updated file list in /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache_v6.mat
number of chl files in list: 3547. number in files_u: 730. number not in files_u but are in time window 6
 
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025122804.mat
reading file 1 of 6: imos-srs/oc/snpp/1d/2025/12/V20251229.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
02-Jan-2026 10:40:52 %done=16 ETA: 02-Jan-2026 10:42:09
reading file 2 of 6: imos-srs/oc/jpss1/1d/2025/12/J20251229.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
/home/vamp1/pub_web/analysis/MODIScomp/2025/2025122904.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025122904.mat
0  0  0  0  0  0  0  0  0
02-Jan-2026 10:43:55 %done=33 ETA: 02-Jan-2026 10:50:31
reading file 3 of 6: imos-srs/oc/snpp/1d/2025/12/V20251230.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
02-Jan-2026 10:44:08 %done=50 ETA: 02-Jan-2026 10:47:40
reading file 4 of 6: imos-srs/oc/jpss1/1d/2025/12/J20251230.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
/home/vamp1/pub_web/analysis/MODIScomp/2025/2025123004.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025123004.mat
0  0  0  0  0  0  0  0  0
02-Jan-2026 10:45:55 %done=66 ETA: 02-Jan-2026 10:48:34
reading file 5 of 6: imos-srs/oc/snpp/1d/2025/12/V20251231.L2OC_VIIRS.aust.chl_oci.nc
02-Jan-2026 10:46:38 %done=83 ETA: 02-Jan-2026 10:47:50
reading file 6 of 6: imos-srs/oc/jpss1/1d/2025/12/J20251231.L2OC_VIIRS.aust.chl_oci.nc
/home/vamp1/pub_web/analysis/MODIScomp/2025/2025123104.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025123104.mat
0   6  40  39  35  10   5  26   3
02-Jan-2026 10:48:45 saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 31-Dec-2025 05:20:00
02-Jan-2026 10:48:45 %done=100 ETA: 02-Jan-2026 10:48:45
ls /home/vamp1/pub_web/analysis/MODIScomp/*.gif
No gifs for date range: 25 Jan 2026 - 01 Jan 2026
ls /home/vamp1/pub_web/analysis/MODIScomp/*.gif
No gifs for date range: 01 Jan 2026 - 31 Dec 2025
02-Jan-2026 10:48:55 rsync -lptgoDdv --password-file=$PWFILE --delete --timeout=480 --exclude=\*.fli MODIScomp/2025/ csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/MODIScomp/2025
rsync took 0.0116mins
 
--2026-01-02 10:48:55--  http://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-22T23%3A40%3A13+AND+TIME+%3C%3D+2026-01-01T23%3A40%3A13+AND+TEMP_b+%3D+true
Resolving geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)... 13.210.230.84, 13.237.17.71, 54.252.49.167
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|13.210.230.84|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://geoserver-123.aodn.org.au:443/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-22T23%3A40%3A13+AND+TIME+%3C%3D+2026-01-01T23%3A40%3A13+AND+TEMP_b+%3D+true [following]
--2026-01-02 10:48:55--  https://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-22T23%3A40%3A13+AND+TIME+%3C%3D+2026-01-01T23%3A40%3A13+AND+TEMP_b+%3D+true
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|13.210.230.84|:443... connected.
HTTP request sent, awaiting response... 200 
Length: unspecified [text/csv]
Saving to: ‘/tmp/tp9e67894c_c89b_4d44_a25d_243b38fe1970.csv’


          /tmp/tp9e     [<=>                 ]       0  --.-KB/s               
         /tmp/tp9e6     [ <=>                ]   1.58M  7.92MB/s               
        /tmp/tp9e67     [  <=>               ]   2.86M  7.12MB/s               
       /tmp/tp9e678     [   <=>              ]   4.25M  7.04MB/s               
      /tmp/tp9e6789     [    <=>             ]   5.63M  6.98MB/s               
     /tmp/tp9e67894     [     <=>            ]   7.03M  6.99MB/s               
    /tmp/tp9e67894c     [      <=>           ]   8.44M  6.99MB/s               
   /tmp/tp9e67894c_     [       <=>          ]   9.77M  6.94MB/s               
  /tmp/tp9e67894c_c     [        <=>         ]  11.14M  6.93MB/s               
 /tmp/tp9e67894c_c8     [         <=>        ]  12.53M  6.91MB/s               
/tmp/tp9e67894c_c89     [          <=>       ]  13.90M  6.91MB/s               
tmp/tp9e67894c_c89b     [           <=>      ]  15.30M  6.91MB/s               
mp/tp9e67894c_c89b_     [            <=>     ]  16.62M  6.88MB/s               
p/tp9e67894c_c89b_4     [             <=>    ]  18.00M  6.89MB/s               
/tp9e67894c_c89b_4d     [              <=>   ]  19.39M  6.89MB/s               
tp9e67894c_c89b_4d4     [               <=>  ]  20.75M  6.88MB/s               
p9e67894c_c89b_4d44     [                <=> ]  22.05M  6.79MB/s               
9e67894c_c89b_4d44_     [                 <=>]  23.43M  6.79MB/s               
e67894c_c89b_4d44_a     [                <=> ]  24.79M  6.82MB/s               
67894c_c89b_4d44_a2     [               <=>  ]  26.18M  6.82MB/s               
7894c_c89b_4d44_a25     [              <=>   ]  27.54M  6.81MB/s               
894c_c89b_4d44_a25d     [             <=>    ]  28.91M  6.80MB/s               
94c_c89b_4d44_a25d_     [            <=>     ]  30.30M  6.81MB/s               
4c_c89b_4d44_a25d_2     [           <=>      ]  31.67M  6.80MB/s               
/tmp/tp9e67894c_c89     [          <=>       ]  32.43M  6.81MB/s    in 4.7s    

2026-01-02 10:49:05 (6.86 MB/s) - ‘/tmp/tp9e67894c_c89b_4d44_a25d_243b38fe1970.csv’ saved [34002996]

FINISHED --2026-01-02 10:49:05--
Total wall clock time: 9.6s
Downloaded: 1 files, 32M in 4.7s (6.86 MB/s)
SOOP dates, sst, lat, lon, latf, lonf
1 23-Nov 00Z - 31-Dec 23Z, 28.2       31.7     -16.93      -6.65      145.7      151.3      -9.08      -6.65      147.1      150.1
2 23-Nov 00Z - 31-Dec 23Z, 20.9       30.6       1.62      27.42      110.5      128.6       1.62      10.35      110.5        120
3 23-Nov 00Z - 30-Dec 23Z, 19.94      24.75     -32.05     -31.82      115.5      115.7        -32     -31.82      115.5      115.7
4 23-Nov 00Z - 31-Dec 23Z, 28.9       32.4     -13.37      -9.23      141.5      144.1     -11.77      -9.89      141.9      142.8
5 23-Nov 00Z - 31-Dec 21Z, 14.2       30.3     -39.27      13.08      100.6      153.8     -10.11      13.05      100.8      137.8
6 22-Nov 23Z - 27-Dec 01Z, 26.42      31.22     -19.28     -11.02      143.2      147.1     -19.26     -16.92        146      146.9
7 22-Nov 23Z - 30-Dec 23Z, 26.73      35.94     -19.26     -10.53      130.5      147.7     -19.26     -14.15      144.3      147.7
8 23-Nov 00Z - 31-Dec 23Z, 14.3       20.7     -41.18     -38.08      144.4      146.4     -41.18     -38.08      144.4      146.4
 
reading ACORN data at 02-Jan-2026 10:49:07
                                          
             
ROT _non-QC 0
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheROT_non-QC2026.mat does not exist
             
SAG _non-QC 0
                                                                                         
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheSAG_non-QC2026.mat                        
had 8 records from 01-Jan-2026 00:30:00 to 01-Jan-2026 17:30:00 = 47% complete for period
              
NEWC _non-QC 0
                                                                                           
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNEWC_non-QC2026.mat                         
had 21 records from 01-Jan-2026 00:00:00 to 01-Jan-2026 20:00:00 = 105% complete for period
              
TURQ _non-QC 0
                                                                                          
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheTURQ_non-QC2026.mat                        
had 15 records from 01-Jan-2026 00:00:00 to 01-Jan-2026 20:00:00 = 75% complete for period
              
CORL _non-QC 0
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCORL_non-QC2026.mat does not exist
             
NWA _non-QC 0
                                                                                          
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNWA_non-QC2026.mat                         
had 11 records from 01-Jan-2026 00:30:00 to 01-Jan-2026 16:30:00 = 69% complete for period
             
COF _non-QC 0
                                                                                           
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCOF_non-QC2026.mat                          
had 16 records from 01-Jan-2026 00:30:00 to 01-Jan-2026 15:30:00 = 107% complete for period
Finished reading ACORN data at 02-Jan-2026 10:49:08
                                                   
reading 11 drifter files
interpolating 4 drifters
getting nrt Argo
Found 269 profiles
                                                                                       
loaded Argo data for 269 profiles, spanning 18-Dec-2025 02:37:34 - 01-Jan-2026 04:34:30
                                                                                       
Reading 240 MNF files and binning at 15-min intervals
Found 943 ship data points in lat, lon range-43  -43  147  147 from 23-Dec-2025 00:04:30 to 01-Jan-2026 22:53:30
count, min, max, median SST: 0  NaN  NaN
glf =
    'nrt_all_v8'
gltypes =
  1x2 cell array
    {'seaglider'}    {'slocum_glider'}
update from thredds?: 0
loaded data for 61 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/nrt_all_v8. Last10:
PortLincoln20250529  57 17-Jun-2025 10:33:31 
TwoRocks20250515     1 24-May-2025 05:37:11 
Portland20250522     1 22-May-2025 18:35:29 
Forster20250507      75 02-Jun-2025 18:38:13 
BassStrait20250501   52 19-May-2025 10:34:34 
Ningaloo20250402     42 16-Apr-2025 10:34:59 
Esperance20250327    41 10-Apr-2025 10:34:16 
Portland20250312     60 02-Apr-2025 10:34:46 
Onslow20250225       66 19-Mar-2025 18:34:16 
Forster20250225      36 09-Mar-2025 18:34:05 
TwoRocks20250219     91 15-Mar-2025 18:34:56 
        
summary:
Finished reading ANFOG (glider) data at 02-Jan-2026 10:49:34
                                                            
                                                              
Doing region 1 Syd-Hob (1/32) starting at 02-Jan-2026 10:49:34
Looking for data in range:
ans =
    '22-Dec-2025 23:40:13'
ans =
    '01-Jan-2026 23:40:13'
chlor_a available 25-May-2022 04:30:00 - 31-Dec-2025 05:20:00(=42h old), 3 files in scope
seeking earlier data
reading
    'in2023_v06/proc/wh75/contour/wh75'
 
/home/vamp1/sco243/investigator_adcp/in2023_v06/proc/wh75/contour/wh75.nc
Cruise area: 151       158     -38.9     -31.9
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251229, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
13-Dec-2025 12:00:00
14-Dec-2025 12:00:00
29-Dec-2025 12:00:00
haverun =
    'CMRNRT'
region =
        146.35        157.25        -44.65        -32.35
146.6        0.2        157 -44.4        0.2      -32.6
nav 0
CLNAME - "CARS_latest" version being used by default.
[  This warning once per session only  ]
shipstride =
          7.00
region 1 Syd-Hob record 1/3 at 02-Jan-2026 10:49:38LT, image time: 24-Dec-2025 04:30:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/snpp/1d/2025/12/V20251224.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025122404
/home/vamp1/pub_web/analysis/Syd-Hob_chl/2025/2025122404.gif
region 1 Syd-Hob record 2/3 at 02-Jan-2026 10:49:52LT, image time: 24-Dec-2025 05:20:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/jpss1/1d/2025/12/J20251224.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025122405
/home/vamp1/pub_web/analysis/Syd-Hob_chl/2025/2025122405.gif
region 1 Syd-Hob record 3/3 at 02-Jan-2026 10:50:08LT, image time: 31-Dec-2025 05:20:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/jpss1/1d/2025/12/J20251231.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025123105
>>