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                   R2018a (9.4.0.813654) 64-bit (glnxa64)
                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :66
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click here.] 
The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
psst_OC starting job nrtchl at 19-Dec-2025 10:40:13 on oc3-hba

usesats =
          2.00          3.00         18.00         19.00         20.00
Looking for data in range:
08-Dec-2025 23:40:13
18-Dec-2025 23:40:13
ans =
  32x18 char array
    'Forster  SNSW     '
    'Bris3_   Brisbane2'
    'Brisbane2Brisbane2'
    'Bris-Syd Bris-Syd '
    'Syd-Hob  Syd-Hob  '
    'SNSW     SNSW     '
    'LordHoweSLordHoweS'
    'Coffs    Coffs    '
    'Brisbane Brisbane '
    'EGAB     RechEyre '
    'TasE     TasE     '
    'Adelaide Adelaide '
    'Tas      Tas      '
    'CLeeu    CLeeu    '
    'DonPer   DonPer   '
    'Rottnest Rottnest '
    'SAgulfs  SAgulfs  '
    'Ningaloo Ningaloo '
    'Perth    Perth    '
    'NWS      NWS      '
    'AlbEsp   AlbEsp   '
    'RechEyre RechEyre '
    'SGBR     SGBR     '
    'CGBR     CGBR     '
    'NGBR     NGBR     '
    'TimorP   Timor    '
    'XmasI    XmasI    '
    'KimberleyKimberley'
    'Rowley   Kimberley'
    'Dongara  Perth    '
    'Norfolk  LordHoweS'
    'GoC      GOC      '
first read
diroutcomp =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/'
indexcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat'
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 16-Dec-2025 05:20:00
ditching chlpcgood for 4 files with chl for after 14-Dec-2025 05:20:00
flcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat'
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/snpp/1d/2025/catalog.xml
imos-srs/oc/snpp/1d/2025/12/V20251217.L2OC_VIIRS.aust.chl_oci.nc              
                                                                              
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/jpss1/1d/2025/catalog.xml
imos-srs/oc/jpss1/1d/2025/12/J20251217.L2OC_VIIRS.aust.chl_oci.nc              
                                                                               
updated file list in /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat
number of chl files in list: 3519. number in files_u: 702. number not in files_u but are in time window 6
 
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121404.mat
reading file 1 of 6: imos-srs/oc/snpp/1d/2025/12/V20251215.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
19-Dec-2025 10:41:10 %done=16 ETA: 19-Dec-2025 10:42:48
reading file 2 of 6: imos-srs/oc/jpss1/1d/2025/12/J20251215.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
/home/vamp1/pub_web/analysis/MODIScomp/2025121504.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121504.mat
0  0  0  0  0  0  0  0  0
19-Dec-2025 10:44:23 %done=33 ETA: 19-Dec-2025 10:51:26
reading file 3 of 6: imos-srs/oc/snpp/1d/2025/12/V20251216.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
19-Dec-2025 10:44:36 %done=50 ETA: 19-Dec-2025 10:48:20
reading file 4 of 6: imos-srs/oc/jpss1/1d/2025/12/J20251216.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
/home/vamp1/pub_web/analysis/MODIScomp/2025121604.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121604.mat
0  0  0  0  0  0  0  0  0
19-Dec-2025 10:46:26 %done=66 ETA: 19-Dec-2025 10:49:13
reading file 5 of 6: imos-srs/oc/snpp/1d/2025/12/V20251217.L2OC_VIIRS.aust.chl_oci.nc
19-Dec-2025 10:46:59 %done=83 ETA: 19-Dec-2025 10:48:12
reading file 6 of 6: imos-srs/oc/jpss1/1d/2025/12/J20251217.L2OC_VIIRS.aust.chl_oci.nc
/home/vamp1/pub_web/analysis/MODIScomp/2025121704.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121704.mat
49   44   49   29  132   44    1   22   13
19-Dec-2025 10:49:06 saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 17-Dec-2025 05:20:00
19-Dec-2025 10:49:06 %done=100 ETA: 19-Dec-2025 10:49:06
ls /home/vamp1/pub_web/analysis/MODIScomp//*.gif
mfli =
    'MODIScomp202512.fli'
/home/griffin/scripts/gifs2fliMC89.sh MODIScomp202512.fli 150  2025120104.gif 2025120204.gif 2025120304.gif 2025120404.gif 2025120504.gif 2025120604.gif 2025120704.gif 2025120804.gif 2025120904.gif 2025121004.gif 2025121104.gif 2025121204.gif 2025121304.gif 2025121404.gif 2025121504.gif 2025121604.gif 2025121704.gif
/home/griffin/scripts/fli2videoMC.sh MODIScomp202512.fli 7
19-Dec-2025 10:49:23 rsync -lptgoDdv --password-file=$PWFILE --delete --timeout=480 --exclude=\*.fli MODIScomp/ csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/MODIScomp
rsync took 0.0319mins
 
--2025-12-19 10:49:25--  http://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-08T23%3A40%3A13+AND+TIME+%3C%3D+2025-12-18T23%3A40%3A13+AND+TEMP_b+%3D+true
Resolving geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)... 54.252.49.167, 13.210.230.84, 13.237.17.71
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|54.252.49.167|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://geoserver-123.aodn.org.au:443/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-08T23%3A40%3A13+AND+TIME+%3C%3D+2025-12-18T23%3A40%3A13+AND+TEMP_b+%3D+true [following]
--2025-12-19 10:49:25--  https://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-08T23%3A40%3A13+AND+TIME+%3C%3D+2025-12-18T23%3A40%3A13+AND+TEMP_b+%3D+true
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|54.252.49.167|:443... connected.
HTTP request sent, awaiting response... 200 
Length: unspecified [text/csv]
Saving to: ‘/tmp/tp04fcefe7_e8f4_4386_9b01_f8fa9aa603b7.csv’


          /tmp/tp04     [<=>                 ]       0  --.-KB/s               
         /tmp/tp04f     [ <=>                ]   1.60M  7.96MB/s               
        /tmp/tp04fc     [  <=>               ]   2.88M  7.18MB/s               
       /tmp/tp04fce     [   <=>              ]   4.22M  7.02MB/s               
      /tmp/tp04fcef     [    <=>             ]   5.59M  6.98MB/s               
     /tmp/tp04fcefe     [     <=>            ]   6.93M  6.91MB/s               
    /tmp/tp04fcefe7     [      <=>           ]   8.33M  6.92MB/s               
   /tmp/tp04fcefe7_     [       <=>          ]   9.70M  6.89MB/s               
  /tmp/tp04fcefe7_e     [        <=>         ]  11.08M  6.89MB/s               
 /tmp/tp04fcefe7_e8     [         <=>        ]  12.47M  6.89MB/s               
/tmp/tp04fcefe7_e8f     [          <=>       ]  13.80M  6.86MB/s               
tmp/tp04fcefe7_e8f4     [           <=>      ]  15.16M  6.86MB/s               
mp/tp04fcefe7_e8f4_     [            <=>     ]  16.34M  6.78MB/s               
p/tp04fcefe7_e8f4_4     [             <=>    ]  17.45M  6.68MB/s               
/tp04fcefe7_e8f4_43     [              <=>   ]  18.79M  6.68MB/s               
tp04fcefe7_e8f4_438     [               <=>  ]  20.17M  6.69MB/s               
p04fcefe7_e8f4_4386     [                <=> ]  21.49M  6.60MB/s               
04fcefe7_e8f4_4386_     [                 <=>]  22.84M  6.63MB/s               
4fcefe7_e8f4_4386_9     [                <=> ]  24.18M  6.62MB/s               
fcefe7_e8f4_4386_9b     [               <=>  ]  25.55M  6.62MB/s               
cefe7_e8f4_4386_9b0     [              <=>   ]  26.93M  6.63MB/s               
efe7_e8f4_4386_9b01     [             <=>    ]  28.32M  6.62MB/s               
fe7_e8f4_4386_9b01_     [            <=>     ]  29.69M  6.62MB/s               
e7_e8f4_4386_9b01_f     [           <=>      ]  31.01M  6.62MB/s               
7_e8f4_4386_9b01_f8     [          <=>       ]  32.41M  6.61MB/s               
_e8f4_4386_9b01_f8f     [         <=>        ]  33.79M  6.63MB/s               
/tmp/tp04fcefe7_e8f     [        <=>         ]  34.68M  6.63MB/s    in 5.2s    

2025-12-19 10:49:35 (6.72 MB/s) - ‘/tmp/tp04fcefe7_e8f4_4386_9b01_f8fa9aa603b7.csv’ saved [36368703]

FINISHED --2025-12-19 10:49:35--
Total wall clock time: 10s
Downloaded: 1 files, 35M in 5.2s (6.72 MB/s)
SOOP dates, sst, lat, lon, latf, lonf
1 09-Nov 00Z - 17-Dec 23Z, 28.2       29.4     -16.93     -16.46      145.7        148     -16.93     -16.62      145.7      146.9
2 09-Nov 00Z - 17-Dec 23Z, 19.1       29.6       9.15      34.19      121.3      132.7       9.15      14.68      121.8      124.8
3 08-Nov 23Z - 16-Dec 23Z, 19.03      24.75     -32.05     -31.82      115.5      115.7     -32.03     -31.82      115.6      115.7
4 09-Nov 00Z - 17-Dec 23Z, 28.6       32.4     -13.37      -9.22      141.5      144.1     -13.37      -9.53      141.5      144.1
5 09-Nov 00Z - 17-Dec 23Z, 14.2       30.7     -39.27      13.08      100.6      153.8     -39.25      -26.7        127      153.8
6 08-Nov 23Z - 16-Dec 23Z, 25.85      31.89        -22     -11.02      143.2      152.7      -13.9     -11.02      143.2      144.2
7 08-Nov 23Z - 16-Dec 23Z, 23.39      35.94     -21.89     -9.935      113.9      142.2     -15.21     -10.54      139.8      142.2
8 09-Nov 00Z - 17-Dec 23Z, 13.5       19.7     -41.18     -38.08      144.4      146.4     -41.18     -38.08      144.4      146.4
 
reading ACORN data at 19-Dec-2025 10:49:38
                                          
             
ROT _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheROT_non-QC2025.mat                           
had 2891 records from 23-Jul-2025 06:30:00 to 18-Dec-2025 20:00:00 = 81% complete for period
             
SAG _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheSAG_non-QC2025.mat                           
had 4535 records from 12-Mar-2025 00:30:00 to 18-Dec-2025 19:30:00 = 67% complete for period
              
NEWC _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNEWC_non-QC2025.mat                          
had 3449 records from 11-Jun-2025 07:00:00 to 18-Dec-2025 09:00:00 = 76% complete for period
              
TURQ _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheTURQ_non-QC2025.mat                          
had 6339 records from 07-Jan-2025 11:00:00 to 18-Dec-2025 18:00:00 = 76% complete for period
              
CORL _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCORL_non-QC2025.mat                          
had 6168 records from 07-Jan-2025 11:00:00 to 06-Dec-2025 13:00:00 = 77% complete for period
             
NWA _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNWA_non-QC2025.mat                           
had 5838 records from 01-Jan-2025 00:30:00 to 18-Dec-2025 10:30:00 = 69% complete for period
             
COF _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCOF_non-QC2025.mat                           
had 6022 records from 27-Mar-2025 02:30:00 to 18-Dec-2025 04:30:00 = 94% complete for period
Finished reading ACORN data at 19-Dec-2025 10:49:48
                                                   
reading 11 drifter files
interpolating 4 drifters
getting nrt Argo
Found 266 profiles
                                                                                       
loaded Argo data for 266 profiles, spanning 03-Dec-2025 23:44:20 - 18-Dec-2025 05:36:30
                                                                                       
Reading 233 MNF files and binning at 15-min intervals
Found 929 ship data points in lat, lon range-44  -43  147  149 from 09-Dec-2025 00:08:30 to 18-Dec-2025 17:53:30
count, min, max, median SST: 577   12   16   15
glf =
    'nrt_all_v8'
gltypes =
  1x2 cell array
    {'seaglider'}    {'slocum_glider'}
update from thredds?: 0
loaded data for 61 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/nrt_all_v8. Last10:
PortLincoln20250529  57 17-Jun-2025 10:33:31 
TwoRocks20250515     1 24-May-2025 05:37:11 
Portland20250522     1 22-May-2025 18:35:29 
Forster20250507      75 02-Jun-2025 18:38:13 
BassStrait20250501   52 19-May-2025 10:34:34 
Ningaloo20250402     42 16-Apr-2025 10:34:59 
Esperance20250327    41 10-Apr-2025 10:34:16 
Portland20250312     60 02-Apr-2025 10:34:46 
Onslow20250225       66 19-Mar-2025 18:34:16 
Forster20250225      36 09-Mar-2025 18:34:05 
TwoRocks20250219     91 15-Mar-2025 18:34:56 
        
summary:
Finished reading ANFOG (glider) data at 19-Dec-2025 10:50:15
                                                            
                                                               
Doing region 47 Forster (1/32) starting at 19-Dec-2025 10:50:15
Looking for data in range:
ans =
    '08-Dec-2025 23:40:13'
ans =
    '18-Dec-2025 23:40:13'
chlor_a available 25-May-2022 04:30:00 - 17-Dec-2025 05:20:00(=42h old), 1 files in scope
seeking earlier data
reading
    'in2023_v06/proc/wh75/contour/wh75'
 
/home/vamp1/sco243/investigator_adcp/in2023_v06/proc/wh75/contour/wh75.nc
Cruise area: 151       158     -38.9     -31.9
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251216, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
29-Nov-2025 12:00:00
30-Nov-2025 12:00:00
16-Dec-2025 12:00:00
haverun =
    'CMRNRT'
region =
        150.15        155.65        -35.05        -30.35
150.4        0.2      155.4 -34.8        0.2      -30.6
nav 0
CLNAME - "CARS_latest" version being used by default.
[  This warning once per session only  ]
shipstride =
          3.00
region 47 Forster record 1/1 at 19-Dec-2025 10:50:19LT, image time: 17-Dec-2025 04:30:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/snpp/1d/2025/12/V20251217.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025121704
FS_dnum-dnum(i)
1
1
0
0
1
1
1
0
0
1
1
0
0
0
1
1
1
1
1
1
1
0
0
0
0
0
0
1
0
0
0
0
0
0
0
0
0
1
1
1
0
0
0
0
1
1
0
1
1
0
1
1
1
0
1
0
0
0