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                  Copyright 1984-2018 The MathWorks, Inc.
                   R2018a (9.4.0.813654) 64-bit (glnxa64)
                             February 23, 2018

 
To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.
 
running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :66
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click here.] 
The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
psst_OC starting job nrtchl at 14-Dec-2025 17:40:13 on oc3-hba

usesats =
          2.00          3.00         18.00         19.00         20.00
Looking for data in range:
04-Dec-2025 06:40:14
14-Dec-2025 06:40:14
ans =
  32x18 char array
    'Forster  SNSW     '
    'Bris3_   Brisbane2'
    'Brisbane2Brisbane2'
    'Bris-Syd Bris-Syd '
    'Syd-Hob  Syd-Hob  '
    'SNSW     SNSW     '
    'LordHoweSLordHoweS'
    'Coffs    Coffs    '
    'Brisbane Brisbane '
    'EGAB     RechEyre '
    'TasE     TasE     '
    'Adelaide Adelaide '
    'Tas      Tas      '
    'CLeeu    CLeeu    '
    'DonPer   DonPer   '
    'Rottnest Rottnest '
    'SAgulfs  SAgulfs  '
    'Ningaloo Ningaloo '
    'Perth    Perth    '
    'NWS      NWS      '
    'AlbEsp   AlbEsp   '
    'RechEyre RechEyre '
    'SGBR     SGBR     '
    'CGBR     CGBR     '
    'NGBR     NGBR     '
    'TimorP   Timor    '
    'XmasI    XmasI    '
    'KimberleyKimberley'
    'Rowley   Kimberley'
    'Dongara  Perth    '
    'Norfolk  LordHoweS'
    'GoC      GOC      '
first read
diroutcomp =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/'
indexcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat'
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 12-Dec-2025 05:20:00
ditching chlpcgood for 4 files with chl for after 10-Dec-2025 05:20:00
flcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat'
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/snpp/1d/2025/catalog.xml
imos-srs/oc/snpp/1d/2025/12/V20251213.L2OC_VIIRS.aust.chl_oci.nc              
                                                                              
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/jpss1/1d/2025/catalog.xml
imos-srs/oc/jpss1/1d/2025/12/J20251212.L2OC_VIIRS.aust.chl_oci.nc              
                                                                               
updated file list in /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat
number of chl files in list: 3511. number in files_u: 693. number not in files_u but are in time window 5
 
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121004.mat
reading file 1 of 5: imos-srs/oc/snpp/1d/2025/12/V20251211.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
14-Dec-2025 17:40:58 %done=20 ETA: 14-Dec-2025 17:41:56
reading file 2 of 5: imos-srs/oc/jpss1/1d/2025/12/J20251211.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
/home/vamp1/pub_web/analysis/MODIScomp/2025121104.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121104.mat
0  0  0  0  0  0  0  0  0
14-Dec-2025 17:44:05 %done=40 ETA: 14-Dec-2025 17:49:08
reading file 3 of 5: imos-srs/oc/snpp/1d/2025/12/V20251212.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
14-Dec-2025 17:44:21 %done=60 ETA: 14-Dec-2025 17:46:46
reading file 4 of 5: imos-srs/oc/jpss1/1d/2025/12/J20251212.L2OC_VIIRS.aust.chl_oci.nc
/home/vamp1/pub_web/analysis/MODIScomp/2025121204.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121204.mat
40  58  74  99  55  27   0  21   6
14-Dec-2025 17:46:35 %done=80 ETA: 14-Dec-2025 17:48:04
reading file 5 of 5: imos-srs/oc/snpp/1d/2025/12/V20251213.L2OC_VIIRS.aust.chl_oci.nc
/home/vamp1/pub_web/analysis/MODIScomp/2025121304.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025121304.mat
8  47   0  76   3  10  23  43  29
14-Dec-2025 17:48:49 saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 13-Dec-2025 04:30:00
14-Dec-2025 17:48:49 %done=100 ETA: 14-Dec-2025 17:48:49
ls /home/vamp1/pub_web/analysis/MODIScomp//*.gif
mfli =
    'MODIScomp202512.fli'
/home/griffin/scripts/gifs2fliMC89.sh MODIScomp202512.fli 150  2025120104.gif 2025120204.gif 2025120304.gif 2025120404.gif 2025120504.gif 2025120604.gif 2025120704.gif 2025120804.gif 2025120904.gif 2025121004.gif 2025121104.gif 2025121204.gif 2025121304.gif
/home/griffin/scripts/fli2videoMC.sh MODIScomp202512.fli 7
14-Dec-2025 17:49:40 rsync -lptgoDdv --password-file=$PWFILE --delete --timeout=480 --exclude=\*.fli MODIScomp/ csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/MODIScomp
rsync took 0.0237mins
 
--2025-12-14 17:49:42--  http://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-04T06%3A40%3A14+AND+TIME+%3C%3D+2025-12-14T06%3A40%3A14+AND+TEMP_b+%3D+true
Resolving geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)... 13.210.230.84, 13.237.17.71, 54.252.49.167
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|13.210.230.84|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://geoserver-123.aodn.org.au:443/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-04T06%3A40%3A14+AND+TIME+%3C%3D+2025-12-14T06%3A40%3A14+AND+TEMP_b+%3D+true [following]
--2025-12-14 17:49:42--  https://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-11-04T06%3A40%3A14+AND+TIME+%3C%3D+2025-12-14T06%3A40%3A14+AND+TEMP_b+%3D+true
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|13.210.230.84|:443... connected.
HTTP request sent, awaiting response... 200 
Length: unspecified [text/csv]
Saving to: ‘/tmp/tp9195d0b9_fec9_4d3c_bf83_85c517177a69.csv’


          /tmp/tp91     [<=>                 ]       0  --.-KB/s               
         /tmp/tp919     [ <=>                ]   1.53M  7.62MB/s               
        /tmp/tp9195     [  <=>               ]   2.86M  7.13MB/s               
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      /tmp/tp9195d0     [    <=>             ]   5.59M  6.98MB/s               
     /tmp/tp9195d0b     [     <=>            ]   6.92M  6.91MB/s               
    /tmp/tp9195d0b9     [      <=>           ]   8.31M  6.91MB/s               
   /tmp/tp9195d0b9_     [       <=>          ]   9.69M  6.90MB/s               
  /tmp/tp9195d0b9_f     [        <=>         ]  11.03M  6.87MB/s               
 /tmp/tp9195d0b9_fe     [         <=>        ]  12.39M  6.86MB/s               
/tmp/tp9195d0b9_fec     [          <=>       ]  13.78M  6.87MB/s               
tmp/tp9195d0b9_fec9     [           <=>      ]  15.10M  6.84MB/s               
mp/tp9195d0b9_fec9_     [            <=>     ]  16.38M  6.80MB/s               
p/tp9195d0b9_fec9_4     [             <=>    ]  17.75M  6.81MB/s               
/tp9195d0b9_fec9_4d     [              <=>   ]  19.12M  6.81MB/s               
tp9195d0b9_fec9_4d3     [               <=>  ]  20.47M  6.81MB/s               
p9195d0b9_fec9_4d3c     [                <=> ]  21.86M  6.75MB/s               
9195d0b9_fec9_4d3c_     [                 <=>]  23.24M  6.77MB/s               
195d0b9_fec9_4d3c_b     [                <=> ]  24.60M  6.77MB/s               
95d0b9_fec9_4d3c_bf     [               <=>  ]  25.96M  6.77MB/s               
5d0b9_fec9_4d3c_bf8     [              <=>   ]  27.33M  6.78MB/s               
d0b9_fec9_4d3c_bf83     [             <=>    ]  28.69M  6.78MB/s               
0b9_fec9_4d3c_bf83_     [            <=>     ]  30.08M  6.77MB/s               
b9_fec9_4d3c_bf83_8     [           <=>      ]  31.41M  6.77MB/s               
9_fec9_4d3c_bf83_85     [          <=>       ]  32.76M  6.76MB/s               
_fec9_4d3c_bf83_85c     [         <=>        ]  34.15M  6.77MB/s               
fec9_4d3c_bf83_85c5     [        <=>         ]  35.53M  6.78MB/s               
/tmp/tp9195d0b9_fec     [       <=>          ]  35.56M  6.78MB/s    in 5.2s    

2025-12-14 17:49:52 (6.81 MB/s) - ‘/tmp/tp9195d0b9_fec9_4d3c_bf83_85c517177a69.csv’ saved [37291354]

FINISHED --2025-12-14 17:49:52--
Total wall clock time: 11s
Downloaded: 1 files, 36M in 5.2s (6.81 MB/s)
SOOP dates, sst, lat, lon, latf, lonf
1 04-Nov 07Z - 13-Dec 23Z, 28.2       29.5     -16.92     -16.46      145.7        148     -16.92     -16.46      145.7        148
2 04-Nov 07Z - 13-Dec 23Z, 19.1       29.4       9.15      34.68      121.3        136       9.15      25.33      121.3      124.8
3 04-Nov 07Z - 12-Dec 23Z, 19.03      23.67     -32.05     -31.82      115.5      115.7     -32.03     -31.83      115.6      115.7
4 04-Nov 07Z - 13-Dec 23Z, 28.2       32.4     -13.37      -9.22      141.5        144     -13.37       -9.5      141.5        144
5 04-Nov 07Z - 13-Dec 23Z, 13.9       30.7     -39.28      13.08      100.6      153.8     -39.27     -11.14      106.5      151.2
6 04-Nov 06Z - 12-Dec 23Z, 23.28      31.89     -23.89     -11.59      143.3      152.7     -18.91      -11.6      143.3      146.6
7 04-Nov 06Z - 12-Dec 23Z, 23.38      35.94     -21.96     -9.935      113.9      141.3      -16.2     -10.69      139.8      141.3
8 04-Nov 07Z - 13-Dec 23Z, 13.3       19.7     -41.18     -38.08      144.4      146.4     -41.18     -38.09      144.4      146.4
 
reading ACORN data at 14-Dec-2025 17:49:55
                                          
             
ROT _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheROT_non-QC2025.mat                           
had 2788 records from 23-Jul-2025 06:30:00 to 13-Dec-2025 20:00:00 = 81% complete for period
             
SAG _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheSAG_non-QC2025.mat                           
had 4462 records from 12-Mar-2025 00:30:00 to 13-Dec-2025 16:30:00 = 67% complete for period
              
NEWC _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNEWC_non-QC2025.mat                          
had 3342 records from 11-Jun-2025 07:00:00 to 13-Dec-2025 16:00:00 = 75% complete for period
              
TURQ _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheTURQ_non-QC2025.mat                          
had 6297 records from 07-Jan-2025 11:00:00 to 13-Dec-2025 17:00:00 = 77% complete for period
              
CORL _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCORL_non-QC2025.mat                          
had 6168 records from 07-Jan-2025 11:00:00 to 06-Dec-2025 13:00:00 = 77% complete for period
             
NWA _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNWA_non-QC2025.mat                           
had 5778 records from 01-Jan-2025 00:30:00 to 13-Dec-2025 09:30:00 = 70% complete for period
             
COF _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCOF_non-QC2025.mat                           
had 5919 records from 27-Mar-2025 02:30:00 to 13-Dec-2025 21:30:00 = 94% complete for period
Finished reading ACORN data at 14-Dec-2025 17:50:05
                                                   
reading 11 drifter files
interpolating 4 drifters
getting nrt Argo
Found 268 profiles
                                                                                       
loaded Argo data for 268 profiles, spanning 29-Nov-2025 06:48:01 - 13-Dec-2025 05:03:56
                                                                                       
Reading 129 MNF files and binning at 15-min intervals
Found 516 ship data points in lat, lon range-44  -43  147  149 from 08-Dec-2025 21:15:30 to 14-Dec-2025 05:53:30
count, min, max, median SST: 421   12   16   15
glf =
    'nrt_all_v8'
gltypes =
  1x2 cell array
    {'seaglider'}    {'slocum_glider'}
update from thredds?: 0
loaded data for 61 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/nrt_all_v8. Last10:
PortLincoln20250529  57 17-Jun-2025 10:33:31 
TwoRocks20250515     1 24-May-2025 05:37:11 
Portland20250522     1 22-May-2025 18:35:29 
Forster20250507      75 02-Jun-2025 18:38:13 
BassStrait20250501   52 19-May-2025 10:34:34 
Ningaloo20250402     42 16-Apr-2025 10:34:59 
Esperance20250327    41 10-Apr-2025 10:34:16 
Portland20250312     60 02-Apr-2025 10:34:46 
Onslow20250225       66 19-Mar-2025 18:34:16 
Forster20250225      36 09-Mar-2025 18:34:05 
TwoRocks20250219     91 15-Mar-2025 18:34:56 
        
summary:
Finished reading ANFOG (glider) data at 14-Dec-2025 17:50:41
                                                            
                                                               
Doing region 47 Forster (1/32) starting at 14-Dec-2025 17:50:42
Looking for data in range:
ans =
    '04-Dec-2025 06:40:14'
ans =
    '14-Dec-2025 06:40:14'
chlor_a available 25-May-2022 04:30:00 - 13-Dec-2025 04:30:00(=26h old), 1 files in scope
seeking earlier data
reading
    'in2023_v06/proc/wh75/contour/wh75'
 
/home/vamp1/sco243/investigator_adcp/in2023_v06/proc/wh75/contour/wh75.nc
Cruise area: 151       158     -38.9     -31.9
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251211, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
24-Nov-2025 12:00:00
25-Nov-2025 12:00:00
11-Dec-2025 12:00:00
haverun =
    'CMRNRT'
region =
        150.15        155.65        -35.05        -30.35
150.4        0.2      155.4 -34.8        0.2      -30.6
nav 0
CLNAME - "CARS_latest" version being used by default.
[  This warning once per session only  ]
shipstride =
          3.00
region 47 Forster record 1/1 at 14-Dec-2025 17:50:46LT, image time: 13-Dec-2025 04:30:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/snpp/1d/2025/12/V20251213.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025121304
/home/vamp1/pub_web/analysis/Forster_chl/2025121304.gif
                                                              
Doing region 46 Bris3_ (2/32) starting at 14-Dec-2025 17:50:52
Looking for data in range:
ans =
    '04-Dec-2025 06:40:14'
ans =
    '14-Dec-2025 06:40:14'
chlor_a available 25-May-2022 04:30:00 - 13-Dec-2025 04:30:00(=26h old), 1 files in scope
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251211, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
24-Nov-2025 12:00:00
25-Nov-2025 12:00:00
11-Dec-2025 12:00:00
haverun =
    'CMRNRT'
region =
        151.75        156.65        -30.45        -25.75
152        0.2      156.4 -30.2        0.2        -26
nav 0
shipstride =
          3.00
region 46 Bris3_ record 1/1 at 14-Dec-2025 17:50:54LT, image time: 13-Dec-2025 04:30:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/snpp/1d/2025/12/V20251213.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025121304
/home/vamp1/pub_web/analysis/Bris3__chl/2025121304.gif
                                                                
Doing region 5 Brisbane2 (3/32) starting at 14-Dec-2025 17:50:59
Looking for data in range:
ans =
    '04-Dec-2025 06:40:14'
ans =
    '14-Dec-2025 06:40:14'
chlor_a available 25-May-2022 04:30:00 - 13-Dec-2025 04:30:00(=26h old), 1 files in scope
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251211, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
24-Nov-2025 12:00:00
25-Nov-2025 12:00:00
11-Dec-2025 12:00:00
haverun =
    'CMRNRT'
region =
        151.35        156.65        -30.25        -23.75
151.6        0.2      156.4 -30        0.2        -24
nav 0
shipstride =
          4.00
region 5 Brisbane2 record 1/1 at 14-Dec-2025 17:51:01LT, image time: 13-Dec-2025 04:30:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/snpp/1d/2025/12/V20251213.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025121304
/home/vamp1/pub_web/analysis/Brisbane2_chl/2025121304.gif
                                                                
Doing region 39 Bris-Syd (4/32) starting at 14-Dec-2025 17:51:07
Looking for data in range:
ans =
    '04-Dec-2025 06:40:14'
ans =
    '14-Dec-2025 06:40:14'
chlor_a available 25-May-2022 04:30:00 - 13-Dec-2025 04:30:00(=26h old), 1 files in scope
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251211, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
24-Nov-2025 12:00:00
25-Nov-2025 12:00:00
11-Dec-2025 12:00:00
haverun =
    'CMRNRT'
region =
        149.95        158.25        -35.05        -26.35
150.2        0.2        158 -34.8        0.2      -26.6
nav 0
shipstride =
          4.00
region 39 Bris-Syd record 1/1 at 14-Dec-2025 17:51:09LT, image time: 13-Dec-2025 04:30:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/snpp/1d/2025/12/V20251213.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025121304
/home/vamp1/pub_web/analysis/Bris-Syd_chl/2025121304.gif
                                                              
Doing region 1 Syd-Hob (5/32) starting at 14-Dec-2025 17:51:17
Looking for data in range:
ans =
    '04-Dec-2025 06:40:14'
ans =
    '14-Dec-2025 06:40:14'
chlor_a available 25-May-2022 04:30:00 - 13-Dec-2025 04:30:00(=26h old), 2 files in scope
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251211, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
24-Nov-2025 12:00:00
25-Nov-2025 12:00:00
11-Dec-2025 12:00:00
haverun =
    'CMRNRT'
region =
        146.35        157.25        -44.65        -32.35
146.6        0.2        157 -44.4        0.2      -32.6
nav 0
shipstride =
          7.00
region 1 Syd-Hob record 1/2 at 14-Dec-2025 17:51:20LT, image time: 12-Dec-2025 05:20:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/jpss1/1d/2025/12/J20251212.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025121205