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                  Copyright 1984-2018 The MathWorks, Inc.
                   R2018a (9.4.0.813654) 64-bit (glnxa64)
                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :66
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click here.] 
The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
psst_OC starting job nrtchl at 14-Nov-2025 17:40:13 on oc3-hba

usesats =
          2.00          3.00         18.00         19.00         20.00
Looking for data in range:
04-Nov-2025 06:40:14
14-Nov-2025 06:40:14
ans =
  32x18 char array
    'Forster  SNSW     '
    'Bris3_   Brisbane2'
    'Brisbane2Brisbane2'
    'Bris-Syd Bris-Syd '
    'Syd-Hob  Syd-Hob  '
    'SNSW     SNSW     '
    'LordHoweSLordHoweS'
    'Coffs    Coffs    '
    'Brisbane Brisbane '
    'EGAB     RechEyre '
    'TasE     TasE     '
    'Adelaide Adelaide '
    'Tas      Tas      '
    'CLeeu    CLeeu    '
    'DonPer   DonPer   '
    'Rottnest Rottnest '
    'SAgulfs  SAgulfs  '
    'Ningaloo Ningaloo '
    'Perth    Perth    '
    'NWS      NWS      '
    'AlbEsp   AlbEsp   '
    'RechEyre RechEyre '
    'SGBR     SGBR     '
    'CGBR     CGBR     '
    'NGBR     NGBR     '
    'TimorP   Timor    '
    'XmasI    XmasI    '
    'KimberleyKimberley'
    'Rowley   Kimberley'
    'Dongara  Perth    '
    'Norfolk  LordHoweS'
    'GoC      GOC      '
first read
diroutcomp =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/'
indexcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat'
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 11-Nov-2025 05:20:00
ditching chlpcgood for 2 files with chl for after 10-Nov-2025 05:20:00
flcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat'
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/snpp/1d/2025/catalog.xml
imos-srs/oc/snpp/1d/2025/11/V20251111.L2OC_VIIRS.aust.chl_oci.nc              
                                                                              
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/jpss1/1d/2025/catalog.xml
imos-srs/oc/jpss1/1d/2025/11/J20251111.L2OC_VIIRS.aust.chl_oci.nc              
                                                                               
updated file list in /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat
number of chl files in list: 3451. number in files_u: 630. number not in files_u but are in time window 2
 
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025111004.mat
reading file 1 of 2: imos-srs/oc/snpp/1d/2025/11/V20251111.L2OC_VIIRS.aust.chl_oci.nc
14-Nov-2025 17:41:17 %done=50 ETA: 14-Nov-2025 17:41:54
reading file 2 of 2: imos-srs/oc/jpss1/1d/2025/11/J20251111.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
/home/vamp1/pub_web/analysis/MODIScomp/2025111104.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025111104.mat
0  0  0  0  0  0  0  0  0
14-Nov-2025 17:44:38 saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 11-Nov-2025 05:20:00
14-Nov-2025 17:44:38 %done=100 ETA: 14-Nov-2025 17:44:38
ls /home/vamp1/pub_web/analysis/MODIScomp//*.gif
mfli =
    'MODIScomp202511.fli'
/home/griffin/scripts/gifs2fliMC89.sh MODIScomp202511.fli 150  2025110104.gif 2025110204.gif 2025110304.gif 2025110404.gif 2025110504.gif 2025110604.gif 2025110704.gif 2025110804.gif 2025110904.gif 2025111004.gif 2025111104.gif
/home/griffin/scripts/fli2videoMC.sh MODIScomp202511.fli 7
14-Nov-2025 17:44:50 rsync -lptgoDdv --password-file=$PWFILE --delete --timeout=480 --exclude=\*.fli MODIScomp/ csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/MODIScomp
rsync took 0.0481mins
 
--2025-11-14 17:44:53--  http://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-10-05T06%3A40%3A14+AND+TIME+%3C%3D+2025-11-14T06%3A40%3A14+AND+TEMP_b+%3D+true
Resolving geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)... 13.236.125.29, 13.211.43.67, 52.63.70.120
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|13.236.125.29|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://geoserver-123.aodn.org.au:443/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-10-05T06%3A40%3A14+AND+TIME+%3C%3D+2025-11-14T06%3A40%3A14+AND+TEMP_b+%3D+true [following]
--2025-11-14 17:44:53--  https://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-10-05T06%3A40%3A14+AND+TIME+%3C%3D+2025-11-14T06%3A40%3A14+AND+TEMP_b+%3D+true
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|13.236.125.29|:443... connected.
HTTP request sent, awaiting response... 200 
Length: unspecified [text/csv]
Saving to: ‘/tmp/tpf7c0eaa4_ad0c_4364_8b31_c16f360fb011.csv’


          /tmp/tpf7     [<=>                 ]       0  --.-KB/s               
         /tmp/tpf7c     [ <=>                ]   1.56M  7.74MB/s               
        /tmp/tpf7c0     [  <=>               ]   2.94M  7.31MB/s               
       /tmp/tpf7c0e     [   <=>              ]   4.30M  7.13MB/s               
      /tmp/tpf7c0ea     [    <=>             ]   5.59M  6.96MB/s               
     /tmp/tpf7c0eaa     [     <=>            ]   6.87M  6.83MB/s               
    /tmp/tpf7c0eaa4     [      <=>           ]   8.16M  6.75MB/s               
   /tmp/tpf7c0eaa4_     [       <=>          ]   9.55M  6.77MB/s               
  /tmp/tpf7c0eaa4_a     [        <=>         ]  10.96M  6.80MB/s               
 /tmp/tpf7c0eaa4_ad     [         <=>        ]  12.24M  6.75MB/s               
/tmp/tpf7c0eaa4_ad0     [          <=>       ]  13.49M  6.69MB/s               
tmp/tpf7c0eaa4_ad0c     [           <=>      ]  14.17M  6.37MB/s               
mp/tpf7c0eaa4_ad0c_     [            <=>     ]  14.99M  6.18MB/s               
p/tpf7c0eaa4_ad0c_4     [             <=>    ]  16.15M  6.15MB/s               
/tpf7c0eaa4_ad0c_43     [              <=>   ]  17.33M  6.13MB/s               
tpf7c0eaa4_ad0c_436     [               <=>  ]  18.60M  6.15MB/s               
pf7c0eaa4_ad0c_4364     [                <=> ]  19.90M  6.07MB/s               
f7c0eaa4_ad0c_4364_     [                 <=>]  21.31M  6.10MB/s               
7c0eaa4_ad0c_4364_8     [                <=> ]  22.62M  6.09MB/s               
c0eaa4_ad0c_4364_8b     [               <=>  ]  23.99M  6.09MB/s               
0eaa4_ad0c_4364_8b3     [              <=>   ]  25.34M  6.13MB/s               
eaa4_ad0c_4364_8b31     [             <=>    ]  26.68M  6.13MB/s               
aa4_ad0c_4364_8b31_     [            <=>     ]  28.09M  6.13MB/s               
a4_ad0c_4364_8b31_c     [           <=>      ]  29.49M  6.14MB/s               
/tmp/tpf7c0eaa4_ad0     [          <=>       ]  29.61M  6.14MB/s    in 4.7s    

2025-11-14 17:45:02 (6.35 MB/s) - ‘/tmp/tpf7c0eaa4_ad0c_4364_8b31_c16f360fb011.csv’ saved [31047945]

FINISHED --2025-11-14 17:45:02--
Total wall clock time: 9.5s
Downloaded: 1 files, 30M in 4.7s (6.35 MB/s)
SOOP dates, sst, lat, lon, latf, lonf
1 05-Oct 07Z - 13-Nov 23Z, 26.7       30.8     -16.93     -10.17      130.6      145.9     -16.76     -15.24      145.4      145.9
2 05-Oct 07Z - 13-Nov 23Z, 18.6       28.5      32.69      35.65      126.5      139.8      32.69      34.68      126.5      138.1
3 05-Oct 07Z - 12-Nov 23Z, 17.62      22.04        -32     -31.82      115.5      115.7     -31.97     -31.83      115.6      115.7
4 05-Oct 07Z - 13-Nov 23Z, 27.4       30.9     -11.76      -9.21      141.9        144     -10.85      -9.22      142.2        144
5 05-Oct 07Z - 13-Nov 23Z, 13.1       30.6     -39.28      13.08      100.7      153.8     -39.28     -22.93      145.1      153.8
6 07-Oct 23Z - 12-Nov 23Z, 23.28      35.35     -23.93     -16.11      145.5      152.7     -23.85     -20.87      149.7      152.7
7 05-Oct 06Z - 12-Nov 23Z, 23.38      32.42     -21.96     -13.59      113.9      122.2     -21.96     -17.76      113.9      122.2
8 05-Oct 07Z - 13-Nov 23Z, 12       17.8     -41.18     -38.08      144.4      146.4     -41.18     -38.08      144.4      146.4
 
reading ACORN data at 14-Nov-2025 17:45:04
                                          
             
ROT _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheROT_non-QC2025.mat                           
had 2152 records from 23-Jul-2025 06:30:00 to 13-Nov-2025 20:00:00 = 79% complete for period
             
SAG _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheSAG_non-QC2025.mat                           
had 4033 records from 12-Mar-2025 00:30:00 to 13-Nov-2025 21:30:00 = 68% complete for period
              
NEWC _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNEWC_non-QC2025.mat                          
had 2849 records from 11-Jun-2025 07:00:00 to 13-Nov-2025 20:00:00 = 76% complete for period
              
TURQ _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheTURQ_non-QC2025.mat                          
had 5808 records from 07-Jan-2025 11:00:00 to 13-Nov-2025 20:00:00 = 78% complete for period
              
CORL _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCORL_non-QC2025.mat                          
had 5780 records from 07-Jan-2025 11:00:00 to 13-Nov-2025 20:00:00 = 78% complete for period
             
NWA _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNWA_non-QC2025.mat                           
had 5278 records from 01-Jan-2025 00:30:00 to 13-Nov-2025 21:30:00 = 69% complete for period
             
COF _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCOF_non-QC2025.mat                           
had 5213 records from 27-Mar-2025 02:30:00 to 13-Nov-2025 21:30:00 = 94% complete for period
Finished reading ACORN data at 14-Nov-2025 17:45:13
                                                   
reading 11 drifter files
interpolating 0 drifters
getting nrt Argo
Found 225 profiles
                                                                                       
loaded Argo data for 225 profiles, spanning 30-Oct-2025 06:47:30 - 13-Nov-2025 06:18:53
                                                                                       
Reading 237 MNF files and binning at 15-min intervals
Found 948 ship data points in lat, lon range-27  -20  153  154 from 04-Nov-2025 07:08:30 to 14-Nov-2025 05:53:30
count, min, max, median SST: 947   22   28   27
glf =
    'nrt_all_v8'
gltypes =
  1x2 cell array
    {'seaglider'}    {'slocum_glider'}
update from thredds?: 0
loaded data for 61 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/nrt_all_v8. Last10:
PortLincoln20250529  57 17-Jun-2025 10:33:31 
TwoRocks20250515     1 24-May-2025 05:37:11 
Portland20250522     1 22-May-2025 18:35:29 
Forster20250507      75 02-Jun-2025 18:38:13 
BassStrait20250501   52 19-May-2025 10:34:34 
Ningaloo20250402     42 16-Apr-2025 10:34:59 
Esperance20250327    41 10-Apr-2025 10:34:16 
Portland20250312     60 02-Apr-2025 10:34:46 
Onslow20250225       66 19-Mar-2025 18:34:16 
Forster20250225      36 09-Mar-2025 18:34:05 
TwoRocks20250219     91 15-Mar-2025 18:34:56 
        
summary:
Finished reading ANFOG (glider) data at 14-Nov-2025 17:45:40
                                                            
                                                               
Doing region 47 Forster (1/32) starting at 14-Nov-2025 17:45:41
Looking for data in range:
ans =
    '04-Nov-2025 06:40:14'
ans =
    '14-Nov-2025 06:40:14'
chlor_a available 25-May-2022 04:30:00 - 11-Nov-2025 05:20:00(=73h old), 2 files in scope
seeking earlier data
reading
    'in2023_v06/proc/wh75/contour/wh75'
 
/home/vamp1/sco243/investigator_adcp/in2023_v06/proc/wh75/contour/wh75.nc
Cruise area: 151       158     -38.9     -31.9
dorun =
    'CMRNRT'
/home/datalib/observations/rs/altimetry/gridded/GSLA/NRT00/ has: 20110901 - 20251111, -60...10, 57...185
get_USNRT is reading GSLA
get_USNRT finished reading GSLA
get_USNRT is reading GSL
get_USNRT finished reading GSL
25-Oct-2025 12:00:00
26-Oct-2025 12:00:00
11-Nov-2025 12:00:00
haverun =
    'CMRNRT'
region =
        150.15        155.65        -35.05        -30.35
150.4        0.2      155.4 -34.8        0.2      -30.6
nav 0
CLNAME - "CARS_latest" version being used by default.
[  This warning once per session only  ]
shipstride =
          3.00
region 47 Forster record 1/2 at 14-Nov-2025 17:45:52LT, image time: 09-Nov-2025 05:20:00Z
getting https://mrs-data.csiro.au/thredds/dodsC/imos-srs/oc/jpss1/1d/2025/11/J20251109.L2OC_VIIRS.aust.chl_oci.nc
plotted: chlor_a 2025110905