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                   R2018a (9.4.0.813654) 64-bit (glnxa64)
                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :66
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click here.] 
The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
psst_OC starting job nrtchl at 29-Oct-2025 17:40:13 on oc3-hba

usesats =
          2.00          3.00         18.00         19.00         20.00
Looking for data in range:
19-Oct-2025 06:40:14
29-Oct-2025 06:40:14
ans =
  32x18 char array
    'Forster  SNSW     '
    'Bris3_   Brisbane2'
    'Brisbane2Brisbane2'
    'Bris-Syd Bris-Syd '
    'Syd-Hob  Syd-Hob  '
    'SNSW     SNSW     '
    'LordHoweSLordHoweS'
    'Coffs    Coffs    '
    'Brisbane Brisbane '
    'EGAB     RechEyre '
    'TasE     TasE     '
    'Adelaide Adelaide '
    'Tas      Tas      '
    'CLeeu    CLeeu    '
    'DonPer   DonPer   '
    'Rottnest Rottnest '
    'SAgulfs  SAgulfs  '
    'Ningaloo Ningaloo '
    'Perth    Perth    '
    'NWS      NWS      '
    'AlbEsp   AlbEsp   '
    'RechEyre RechEyre '
    'SGBR     SGBR     '
    'CGBR     CGBR     '
    'NGBR     NGBR     '
    'TimorP   Timor    '
    'XmasI    XmasI    '
    'KimberleyKimberley'
    'Rowley   Kimberley'
    'Dongara  Perth    '
    'Norfolk  LordHoweS'
    'GoC      GOC      '
first read
diroutcomp =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/'
indexcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat'
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 27-Oct-2025 05:20:00
ditching chlpcgood for 4 files with chl for after 25-Oct-2025 05:20:00
flcache =
    '/home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat'
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/snpp/1d/2025/catalog.xml
imos-srs/oc/snpp/1d/2025/10/V20251027.L2OC_VIIRS.aust.chl_oci.nc              
                                                                              
https://mrs-data.csiro.au/thredds/catalog/imos-srs/oc/jpss1/1d/2025/catalog.xml
imos-srs/oc/jpss1/1d/2025/10/J20251027.L2OC_VIIRS.aust.chl_oci.nc              
                                                                               
updated file list in /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/flcache2025_v1.mat
number of chl files in list: 3419. number in files_u: 600. number not in files_u but are in time window 4
 
loaded /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025102504.mat
reading file 1 of 4: imos-srs/oc/snpp/1d/2025/10/V20251026.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
29-Oct-2025 17:40:48 %done=25 ETA: 29-Oct-2025 17:41:32
reading file 2 of 4: imos-srs/oc/jpss1/1d/2025/10/J20251026.L2OC_VIIRS.aust.chl_oci.nc
the array is entirely composed of NaNs
/home/vamp1/pub_web/analysis/MODIScomp/2025102604.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025102604.mat
0  0  0  0  0  0  0  0  0
29-Oct-2025 17:44:03 %done=50 ETA: 29-Oct-2025 17:47:33
reading file 3 of 4: imos-srs/oc/snpp/1d/2025/10/V20251027.L2OC_VIIRS.aust.chl_oci.nc
29-Oct-2025 17:44:38 %done=75 ETA: 29-Oct-2025 17:45:59
reading file 4 of 4: imos-srs/oc/jpss1/1d/2025/10/J20251027.L2OC_VIIRS.aust.chl_oci.nc
/home/vamp1/pub_web/analysis/MODIScomp/2025102704.gif
saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/overwritecomp/2025102704.mat
42  88  23  68   0  27  24  14  38
29-Oct-2025 17:46:52 saved /home/vamp1/varney/gri159/IMOScache/CHL/chlor_a_ms2/indexcache_v1.mat with chlpcgood for 25-May-2022 04:30:00 - 27-Oct-2025 05:20:00
29-Oct-2025 17:46:52 %done=100 ETA: 29-Oct-2025 17:46:52
ls /home/vamp1/pub_web/analysis/MODIScomp//*.gif
mfli =
    'MODIScomp202510.fli'
/home/griffin/scripts/gifs2fliMC89.sh MODIScomp202510.fli 150  2025100104.gif 2025100204.gif 2025100304.gif 2025100404.gif 2025100504.gif 2025100604.gif 2025100704.gif 2025100804.gif 2025100904.gif 2025101004.gif 2025101104.gif 2025101204.gif 2025101304.gif 2025101404.gif 2025101504.gif 2025101604.gif 2025101704.gif 2025101804.gif 2025101904.gif 2025102004.gif 2025102104.gif 2025102204.gif 2025102304.gif 2025102404.gif 2025102504.gif 2025102604.gif 2025102704.gif
/home/griffin/scripts/fli2videoMC.sh MODIScomp202510.fli 7
29-Oct-2025 17:47:04 rsync -lptgoDdv --password-file=$PWFILE --delete --timeout=480 --exclude=\*.fli MODIScomp/ csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/MODIScomp
rsync took 0.0359mins
 
--2025-10-29 17:47:06--  http://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-09-19T06%3A40%3A14+AND+TIME+%3C%3D+2025-10-29T06%3A40%3A14+AND+TEMP_b+%3D+true
Resolving geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)... 52.64.71.64, 3.104.229.141, 15.134.29.82
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|52.64.71.64|:80... connected.
HTTP request sent, awaiting response... 301 Moved Permanently
Location: https://geoserver-123.aodn.org.au:443/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-09-19T06%3A40%3A14+AND+TIME+%3C%3D+2025-10-29T06%3A40%3A14+AND+TEMP_b+%3D+true [following]
--2025-10-29 17:47:07--  https://geoserver-123.aodn.org.au/geoserver/ows?service=WFS&version=2.0.0&request=GetFeature&typeNames=imos:soop_sst_nrt_trajectory_data&outputFormat=csv&cql_filter=TIME+%3E%3D+2025-09-19T06%3A40%3A14+AND+TIME+%3C%3D+2025-10-29T06%3A40%3A14+AND+TEMP_b+%3D+true
Connecting to geoserver-123.aodn.org.au (geoserver-123.aodn.org.au)|52.64.71.64|:443... connected.
HTTP request sent, awaiting response... 200 
Length: unspecified [text/csv]
Saving to: ‘/tmp/tpe8db7fe4_dcab_4654_af14_7ae6075a666b.csv’


          /tmp/tpe8     [<=>                 ]       0  --.-KB/s               
         /tmp/tpe8d     [ <=>                ]   1.69M  8.46MB/s               
        /tmp/tpe8db     [  <=>               ]   2.99M  7.46MB/s               
       /tmp/tpe8db7     [   <=>              ]   4.35M  7.23MB/s               
      /tmp/tpe8db7f     [    <=>             ]   5.68M  7.08MB/s               
     /tmp/tpe8db7fe     [     <=>            ]   7.05M  7.03MB/s               
    /tmp/tpe8db7fe4     [      <=>           ]   8.45M  7.02MB/s               
   /tmp/tpe8db7fe4_     [       <=>          ]   9.83M  7.00MB/s               
  /tmp/tpe8db7fe4_d     [        <=>         ]  11.23M  7.00MB/s               
 /tmp/tpe8db7fe4_dc     [         <=>        ]  12.54M  6.93MB/s               
/tmp/tpe8db7fe4_dca     [          <=>       ]  13.93M  6.93MB/s               
tmp/tpe8db7fe4_dcab     [           <=>      ]  15.33M  6.93MB/s               
mp/tpe8db7fe4_dcab_     [            <=>     ]  16.69M  6.92MB/s               
p/tpe8db7fe4_dcab_4     [             <=>    ]  18.09M  6.92MB/s               
/tpe8db7fe4_dcab_46     [              <=>   ]  19.48M  6.93MB/s               
tpe8db7fe4_dcab_465     [               <=>  ]  20.82M  6.91MB/s               
pe8db7fe4_dcab_4654     [                <=> ]  22.11M  7.08MB/s               
e8db7fe4_dcab_4654_     [                 <=>]  23.45M  6.77MB/s               
8db7fe4_dcab_4654_a     [                <=> ]  24.85M  6.80MB/s               
db7fe4_dcab_4654_af     [               <=>  ]  26.19M  6.80MB/s               
b7fe4_dcab_4654_af1     [              <=>   ]  27.57M  6.81MB/s               
/tmp/tpe8db7fe4_dca     [             <=>    ]  28.91M  6.80MB/s    in 4.2s    

2025-10-29 17:47:16 (6.86 MB/s) - ‘/tmp/tpe8db7fe4_dcab_4654_af14_7ae6075a666b.csv’ saved [30309998]

FINISHED --2025-10-29 17:47:16--
Total wall clock time: 9.5s
Downloaded: 1 files, 29M in 4.2s (6.86 MB/s)
SOOP dates, sst, lat, lon, latf, lonf
1 19-Sep 07Z - 28-Oct 23Z, 25.2       30.8        -18     -10.17      119.3      145.8     -16.93      -10.5      142.1      145.8
2 19-Sep 07Z - 28-Oct 23Z, 22.4       30.8      -3.23      35.46      126.5      139.8       32.7      34.68      126.5      135.2
3 19-Sep 07Z - 27-Oct 23Z, 16.81      21.16        -32     -31.82      115.5      115.7     -31.96     -31.83      115.6      115.7
4 19-Sep 07Z - 28-Oct 23Z, 26.6       29.3     -12.68      -9.21      141.5        144     -10.85      -9.37        142        144
5 25-Sep 00Z - 28-Oct 23Z, 12.6       30.6     -39.27      13.08      100.7      153.8     -37.48          8      103.3      125.9
6 19-Sep 06Z - 27-Oct 23Z, 24.18      34.64     -23.93     -16.04      145.5      152.4     -23.93     -23.07      150.9      152.4
7 19-Sep 06Z - 27-Oct 23Z, 24.63      32.42     -19.81     -10.49      115.6      145.4     -14.18     -13.61      121.8        122
8 19-Sep 07Z - 28-Oct 23Z, 12      16.45     -41.18     -38.08      144.4      146.4     -41.18     -38.09      144.4      146.4
 
reading ACORN data at 29-Oct-2025 17:47:18
                                          
             
ROT _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheROT_non-QC2025.mat                           
had 1798 records from 23-Jul-2025 06:30:00 to 28-Oct-2025 20:00:00 = 77% complete for period
             
SAG _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheSAG_non-QC2025.mat                           
had 3844 records from 12-Mar-2025 00:30:00 to 28-Oct-2025 21:30:00 = 69% complete for period
              
NEWC _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNEWC_non-QC2025.mat                          
had 2604 records from 11-Jun-2025 07:00:00 to 23-Oct-2025 07:00:00 = 81% complete for period
              
TURQ _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheTURQ_non-QC2025.mat                          
had 5529 records from 07-Jan-2025 11:00:00 to 28-Oct-2025 21:00:00 = 78% complete for period
              
CORL _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCORL_non-QC2025.mat                          
had 5511 records from 07-Jan-2025 11:00:00 to 28-Oct-2025 21:00:00 = 78% complete for period
             
NWA _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheNWA_non-QC2025.mat                           
had 4979 records from 01-Jan-2025 00:30:00 to 28-Oct-2025 21:30:00 = 69% complete for period
             
COF _non-QC 0
                                                                                            
/home/vamp1/varney/gri159/IMOScache/ACORN/cacheCOF_non-QC2025.mat                           
had 5021 records from 27-Mar-2025 02:30:00 to 28-Oct-2025 22:30:00 = 97% complete for period
Finished reading ACORN data at 29-Oct-2025 17:47:26
                                                   
reading 11 drifter files
interpolating 0 drifters
getting nrt Argo
Found 222 profiles
                                                                                       
loaded Argo data for 222 profiles, spanning 14-Oct-2025 09:49:05 - 28-Oct-2025 05:41:00
                                                                                       
Reading 239 MNF files and binning at 15-min intervals
Found 956 ship data points in lat, lon range-23  -18  152  157 from 19-Oct-2025 07:08:30 to 29-Oct-2025 05:53:30
count, min, max, median SST: 956   24   29   25
glf =
    'nrt_all_v8'
gltypes =
  1x2 cell array
    {'seaglider'}    {'slocum_glider'}
update from thredds?: 0
loaded data for 61 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/nrt_all_v8. Last10:
PortLincoln20250529  57 17-Jun-2025 10:33:31 
TwoRocks20250515     1 24-May-2025 05:37:11 
Portland20250522     1 22-May-2025 18:35:29 
Forster20250507      75 02-Jun-2025 18:38:13 
BassStrait20250501   52 19-May-2025 10:34:34 
Ningaloo20250402     42 16-Apr-2025 10:34:59 
Esperance20250327    41 10-Apr-2025 10:34:16 
Portland20250312     60 02-Apr-2025 10:34:46 
Onslow20250225       66 19-Mar-2025 18:34:16 
Forster20250225      36 09-Mar-2025 18:34:05 
TwoRocks20250219     91 15-Mar-2025 18:34:56 
        
summary:
gltypes =
  1x2 cell array
    {'seaglider'}    {'slocum_glider'}
update from thredds?: 0
loaded data for 61 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/nrt_all_v8. Last10:
PortLincoln20250529  57 17-Jun-2025 10:33:31 
TwoRocks20250515     1 24-May-2025 05:37:11 
Portland20250522     1 22-May-2025 18:35:29 
Forster20250507      75 02-Jun-2025 18:38:13 
BassStrait20250501   52 19-May-2025 10:34:34 
Ningaloo20250402     42 16-Apr-2025 10:34:59 
Esperance20250327    41 10-Apr-2025 10:34:16 
Portland20250312     60 02-Apr-2025 10:34:46 
Onslow20250225       66 19-Mar-2025 18:34:16 
Forster20250225      36 09-Mar-2025 18:34:05 
TwoRocks20250219     91 15-Mar-2025 18:34:56 
        
summary: