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                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :59
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The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
jf =
          2.00
pANFOG starting job nrt at 01-Nov-2026 22:20:13 on oc3-hba

ans =
    'sl2026_v1     '
doing 01-Jan-2025 00:00:00 to 31-Dec-2026 00:00:00 so finishing about 09-Nov-2026 22:04:27
gltypes =
  1x1 cell array
    {'slocum_glider'}
update from thredds?: 1
loaded data for 13 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1. Last10:
TwoRocks20261028         22 01-Nov-2026 20:21:41 
Groote_Eylandt20261027   40 01-Nov-2026 20:21:11 
MissionBeach20261022     52 01-Nov-2026 18:21:45 
Ceduna20260924           173 15-Oct-2026 10:20:44 
TasEastCoast20260922     180 15-Oct-2026 08:21:09 
ForsterA20260909         118 29-Sep-2026 08:21:42 
TwoRocksA20260910        8 16-Sep-2026 14:22:16 
Forster20260909          479 10-Sep-2026 08:20:35 
TasEastCoast20260811     226 09-Sep-2026 12:20:59 
TwoRocks20260730         130 18-Aug-2026 18:20:58 
CapricornChannel20260723 121 10-Aug-2026 08:21:36 
  folder       nfol datespan   nnow reading
catfile =
    'https://thredds.aodn.org.au/thredds/catalog/IMOS/ANFOG/REALTIME/slocum_glider/catalog.xml'
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Ceduna20260924/IMOS_ANFOG_BCEOSTUV_20260924T031625Z_SL248_FV00_timeseries_END-20261014T214510Z.nc'}
                                                                            
01-Nov-2026 22:20:15 Found 1 .nc files in IMOS/ANFOG/REALTIME/Ceduna20260924
Ceduna20260924           had data til 14-Oct-2026 21:29:39
not checking for gap-filling files
found 0 uncached .nc files in timerange for Ceduna20260924
Ceduna20260924 1: 24-Sep-2026 - 14-Oct-2026 0:  - 
had already: 173:  24-Sep-2026 03:36:29 - 14-Oct-2026 21:29:39
slocum_glider Ceduna20260924           had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc'}
                                                                             
01-Nov-2026 22:20:15 Found 1 .nc files in IMOS/ANFOG/REALTIME/Forster20260909
Forster20260909          had data til 09-Sep-2026 16:21:51
not checking for gap-filling files
found 1 uncached .nc files in timerange for Forster20260909
Forster20260909 1: 08-Sep-2026 - 10-Sep-2026 1: 08-Sep-2026 23:54:03 - 10-Sep-2026 00:34:47
had already: 479:  09-Sep-2026 00:03:33 - 09-Sep-2026 16:21:51
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc
max(julall)= 10-Sep-2026 00:34:47
length(julall)= 4690
range(find(cndci>2))= 2  4634
range(find(julall>maxjulj))= 3029  4690
2026-09-10T00:47:28Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
1605 1605 12      
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 162.343       165.201       205.777
expected 1605 records with 0>depth<3000 but found only 0 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc
slocum_glider Forster20260909          has 480 dives in area 153 153 -32.3 -32.2 during 09-Sep-2026 00:03:33 to 09-Sep-2026 16:21:51
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/ForsterA20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260928T224413Z.nc'}
                                                                              
01-Nov-2026 22:20:46 Found 1 .nc files in IMOS/ANFOG/REALTIME/ForsterA20260909
ForsterA20260909         had data til 28-Sep-2026 20:47:14
not checking for gap-filling files
found 0 uncached .nc files in timerange for ForsterA20260909
ForsterA20260909 1: 08-Sep-2026 - 28-Sep-2026 0:  - 
had already: 118:  09-Sep-2026 00:03:33 - 28-Sep-2026 20:47:14
slocum_glider ForsterA20260909         had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Groote_Eylandt20261027/IMOS_ANFOG_BCEOSTUV_20261027T031257Z_SL1227_FV00_timeseries_END-20261101T100232Z.nc'}
                                                                                    
01-Nov-2026 22:20:46 Found 1 .nc files in IMOS/ANFOG/REALTIME/Groote_Eylandt20261027
Groote_Eylandt20261027   had data til 01-Nov-2026 07:13:13
not checking for gap-filling files
found 1 uncached .nc files in timerange for Groote_Eylandt20261027
Groote_Eylandt20261027 1: 27-Oct-2026 - 01-Nov-2026 1: 27-Oct-2026 03:12:57 - 01-Nov-2026 10:02:32
had already: 40:  27-Oct-2026 03:24:25 - 01-Nov-2026 07:13:13
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Groote_Eylandt20261027/IMOS_ANFOG_BCEOSTUV_20261027T031257Z_SL1227_FV00_timeseries_END-20261101T100232Z.nc
max(julall)= 01-Nov-2026 10:02:32
length(julall)= 21936
range(find(cndci>2))= 2  21917
range(find(julall>maxjulj))= 21383  21936
2026-11-01T11:16:18Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
535 534 100       
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 173.726       195.184        199.49
expected 535 records with 0>depth<3000 but found only 337 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Groote_Eylandt20261027/IMOS_ANFOG_BCEOSTUV_20261027T031257Z_SL1227_FV00_timeseries_END-20261101T100232Z.nc
slocum_glider Groote_Eylandt20261027   has 41 dives in area 137 138 -13.9 -13.7 during 27-Oct-2026 03:24:25 to 01-Nov-2026 08:57:56
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc'}
                                                                                  
01-Nov-2026 22:21:16 Found 1 .nc files in IMOS/ANFOG/REALTIME/MissionBeach20261022
MissionBeach20261022     had data til 01-Nov-2026 06:10:46
not checking for gap-filling files
found 1 uncached .nc files in timerange for MissionBeach20261022
MissionBeach20261022 1: 22-Oct-2026 - 01-Nov-2026 1: 22-Oct-2026 01:56:43 - 01-Nov-2026 09:59:22
had already: 52:  22-Oct-2026 02:03:27 - 01-Nov-2026 06:10:46
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
max(julall)= 01-Nov-2026 09:59:22
length(julall)= 21358
range(find(cndci>2))= 2  21358
range(find(julall>maxjulj))= 21046  21358
2026-11-01T10:20:54Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
313 310 275       
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
Retry 1: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:CPHL
Retry 2: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:CPHL
Retry 3: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:CPHL
Retry 4: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:CPHL
could not read https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
Retry 1: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:FLU2
Retry 2: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:FLU2
Retry 3: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:FLU2
Retry 4: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:FLU2
could not read https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
Retry 1: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOX1
Retry 2: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOX1
Retry 3: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOX1
Retry 4: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOX1
could not read https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
5,50,95 DOX1= NaN  NaN  NaN
Retry 1: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOXY
Retry 2: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOXY
Retry 3: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOXY
Retry 4: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc var:DOXY
could not read https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
expected 313 records with 0>depth<3000 but found only 135 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
Retry 1: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
Retry 2: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc
Retry 3: https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261101T095922Z.nc