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jf =
          2.00
pANFOG starting job nrt at 28-Oct-2026 18:20:14 on oc3-hba

ans =
    'sl2026_v1     '
doing 01-Jan-2025 00:00:00 to 31-Dec-2026 00:00:00 so finishing about 05-Nov-2026 18:04:28
gltypes =
  1x1 cell array
    {'slocum_glider'}
update from thredds?: 1
loaded data for 12 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1. Last10:
Groote_Eylandt20261027   8 28-Oct-2026 16:21:09 
MissionBeach20261022     21 28-Oct-2026 16:21:36 
Ceduna20260924           173 15-Oct-2026 10:20:44 
TasEastCoast20260922     180 15-Oct-2026 08:21:09 
ForsterA20260909         118 29-Sep-2026 08:21:42 
TwoRocksA20260910        8 16-Sep-2026 14:22:16 
Forster20260909          441 10-Sep-2026 08:20:35 
TasEastCoast20260811     226 09-Sep-2026 12:20:59 
TwoRocks20260730         130 18-Aug-2026 18:20:58 
CapricornChannel20260723 121 10-Aug-2026 08:21:36 
Portland20250522         1 16-Jul-2026 15:48:02 
  folder       nfol datespan   nnow reading
catfile =
    'https://thredds.aodn.org.au/thredds/catalog/IMOS/ANFOG/REALTIME/slocum_glider/catalog.xml'
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Ceduna20260924/IMOS_ANFOG_BCEOSTUV_20260924T031625Z_SL248_FV00_timeseries_END-20261014T214510Z.nc'}
                                                                            
28-Oct-2026 18:20:16 Found 1 .nc files in IMOS/ANFOG/REALTIME/Ceduna20260924
Ceduna20260924           had data til 14-Oct-2026 21:29:39
not checking for gap-filling files
found 0 uncached .nc files in timerange for Ceduna20260924
Ceduna20260924 1: 24-Sep-2026 - 14-Oct-2026 0:  - 
had already: 173:  24-Sep-2026 03:36:29 - 14-Oct-2026 21:29:39
slocum_glider Ceduna20260924           had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc'}
                                                                             
28-Oct-2026 18:20:17 Found 1 .nc files in IMOS/ANFOG/REALTIME/Forster20260909
Forster20260909          had data til 09-Sep-2026 16:21:51
not checking for gap-filling files
found 1 uncached .nc files in timerange for Forster20260909
Forster20260909 1: 08-Sep-2026 - 10-Sep-2026 1: 08-Sep-2026 23:54:03 - 10-Sep-2026 00:34:47
had already: 441:  09-Sep-2026 00:03:33 - 09-Sep-2026 16:21:51
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc
max(julall)= 10-Sep-2026 00:34:47
length(julall)= 4690
range(find(cndci>2))= 2  4634
range(find(julall>maxjulj))= 3029  4690
2026-09-10T00:47:28Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
1605 1605 12      
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 162.343       165.201       205.777
expected 1605 records with 0>depth<3000 but found only 0 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc
slocum_glider Forster20260909          has 442 dives in area 153 153 -32.3 -32.2 during 09-Sep-2026 00:03:33 to 09-Sep-2026 16:21:51
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/ForsterA20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260928T224413Z.nc'}
                                                                              
28-Oct-2026 18:20:46 Found 1 .nc files in IMOS/ANFOG/REALTIME/ForsterA20260909
ForsterA20260909         had data til 28-Sep-2026 20:47:14
not checking for gap-filling files
found 0 uncached .nc files in timerange for ForsterA20260909
ForsterA20260909 1: 08-Sep-2026 - 28-Sep-2026 0:  - 
had already: 118:  09-Sep-2026 00:03:33 - 28-Sep-2026 20:47:14
slocum_glider ForsterA20260909         had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Groote_Eylandt20261027/IMOS_ANFOG_BCEOSTUV_20261027T031257Z_SL1227_FV00_timeseries_END-20261028T065223Z.nc'}
                                                                                    
28-Oct-2026 18:20:46 Found 1 .nc files in IMOS/ANFOG/REALTIME/Groote_Eylandt20261027
Groote_Eylandt20261027   had data til 28-Oct-2026 03:38:43
not checking for gap-filling files
found 1 uncached .nc files in timerange for Groote_Eylandt20261027
Groote_Eylandt20261027 1: 27-Oct-2026 - 28-Oct-2026 1: 27-Oct-2026 03:12:57 - 28-Oct-2026 06:52:23
had already: 8:  27-Oct-2026 03:24:25 - 28-Oct-2026 03:38:43
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Groote_Eylandt20261027/IMOS_ANFOG_BCEOSTUV_20261027T031257Z_SL1227_FV00_timeseries_END-20261028T065223Z.nc
max(julall)= 28-Oct-2026 06:52:23
length(julall)= 4748
range(find(cndci>2))= 2  4670
range(find(julall>maxjulj))= 4131  4748
2026-10-28T07:07:32Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
539 539 20        
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 116.006       193.727       199.033
expected 539 records with 0>depth<3000 but found only 0 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Groote_Eylandt20261027/IMOS_ANFOG_BCEOSTUV_20261027T031257Z_SL1227_FV00_timeseries_END-20261028T065223Z.nc
slocum_glider Groote_Eylandt20261027   has 9 dives in area 137 137 -13.8 -13.7 during 27-Oct-2026 03:24:25 to 28-Oct-2026 03:38:43
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261028T064758Z.nc'}
                                                                                  
28-Oct-2026 18:21:13 Found 1 .nc files in IMOS/ANFOG/REALTIME/MissionBeach20261022
MissionBeach20261022     had data til 28-Oct-2026 03:48:45
not checking for gap-filling files
found 1 uncached .nc files in timerange for MissionBeach20261022
MissionBeach20261022 1: 22-Oct-2026 - 28-Oct-2026 1: 22-Oct-2026 01:56:43 - 28-Oct-2026 06:47:58
had already: 21:  22-Oct-2026 02:03:27 - 28-Oct-2026 03:48:45
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261028T064758Z.nc
max(julall)= 28-Oct-2026 06:47:58
length(julall)= 12728
range(find(cndci>2))= 2  12728
range(find(julall>maxjulj))= 12483  12728
2026-10-28T06:59:44Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
246 244 168       
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 208.49        210.95        215.64
expected 246 records with 0>depth<3000 but found only 245 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/MissionBeach20261022/IMOS_ANFOG_BCEOSTUV_20261022T015643Z_SL209_FV00_timeseries_END-20261028T064758Z.nc
slocum_glider MissionBeach20261022     has 22 dives in area 146 147 -17.8 -17.7 during 22-Oct-2026 02:03:27 to 28-Oct-2026 06:46:26
........
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260922/IMOS_ANFOG_BCEOSTUV_20260922T004118Z_SL287_FV00_timeseries_END-20261014T205729Z.nc'}
                                                                                  
28-Oct-2026 18:21:40 Found 1 .nc files in IMOS/ANFOG/REALTIME/TasEastCoast20260922
TasEastCoast20260922     had data til 14-Oct-2026 20:07:06
not checking for gap-filling files
found 0 uncached .nc files in timerange for TasEastCoast20260922
TasEastCoast20260922 1: 22-Sep-2026 - 14-Oct-2026 0:  - 
had already: 180:  22-Sep-2026 00:56:28 - 14-Oct-2026 20:07:06
slocum_glider TasEastCoast20260922     had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20261028/IMOS_ANFOG_BCEOSTUV_20261028T050305Z_SL1292_FV00_timeseries_END-20261028T070557Z.nc'}
                                                                              
28-Oct-2026 18:21:41 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocks20261028
uncached mission detected:
TwoRocks20261028          
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for TwoRocks20261028
TwoRocks20261028 1: 28-Oct-2026 - 28-Oct-2026 1: 28-Oct-2026 05:03:05 - 28-Oct-2026 07:05:57
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20261028/IMOS_ANFOG_BCEOSTUV_20261028T050305Z_SL1292_FV00_timeseries_END-20261028T070557Z.nc
max(julall)= 28-Oct-2026 07:05:57
length(julall)= 323
range(find(cndci>2))= 2  304
range(find(julall>maxjulj))= 1  323
2026-10-28T07:17:23Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
303 302 2         
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 233.361       234.612        236.05
expected 303 records with 0>depth<3000 but found only 93 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20261028/IMOS_ANFOG_BCEOSTUV_20261028T050305Z_SL1292_FV00_timeseries_END-20261028T070557Z.nc
slocum_glider TwoRocks20261028         has 1 dives in area 116 116 -31.9 -31.9 during 28-Oct-2026 05:10:44 to 28-Oct-2026 05:27:14
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocksA20260910/IMOS_ANFOG_BCEOSTUV_20260910T062513Z_SL1227_FV00_timeseries_END-20260916T035749Z.nc'}
                                                                               
28-Oct-2026 18:22:00 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocksA20260910
TwoRocksA20260910        had data til 16-Sep-2026 03:15:21
not checking for gap-filling files
found 0 uncached .nc files in timerange for TwoRocksA20260910
TwoRocksA20260910 1: 10-Sep-2026 - 16-Sep-2026 0:  - 
had already: 8:  10-Sep-2026 06:31:53 - 16-Sep-2026 03:15:21
slocum_glider TwoRocksA20260910        had no new data in the time period
                                                                       
MISSING/RENAMED/REPROCESSED MISSIONS: (in the cache but not at thredds)
Esperance20260526       
Portland20250522        
CapricornChannel20260723
TwoRocks20260730        
TasEastCoast20260811    
        
summary:
cqOK=No_QC_performedGood_dataProbably_good_dataBad_data_that_are_potentially_correctableBad_dataValue_changedNot_used
ln -s -f /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1.mat /home/vamp1/varney/gri159/IMOScache/ANFOG/latest_nrt_sl.mat
calculating glider velocities
Esperance20260526        travelled 538 km
Portland20250522         travelled 1 km
CapricornChannel20260723 travelled 415 km
TwoRocks20260730         travelled 251 km
TasEastCoast20260811     travelled 429 km
Forster20260909          travelled 15 km
TwoRocksA20260910        travelled 101 km
ForsterA20260909         travelled 426 km
TasEastCoast20260922     travelled 423 km
Ceduna20260924           travelled 440 km
MissionBeach20261022     travelled 111 km
Groote_Eylandt20261027   travelled 20 km
TwoRocks20261028         travelled 0 km
saving glider velocities
                                                
Esperance20260526        1084 surfacings to 30m.
                                             
Portland20250522         2 surfacings to 30m.
                                               
CapricornChannel20260723 630 surfacings to 30m.
                                                
TwoRocks20260730         1232 surfacings to 30m.
                                               
TasEastCoast20260811     897 surfacings to 30m.
                                              
Forster20260909          30 surfacings to 30m.
                                               
TwoRocksA20260910        600 surfacings to 30m.
                                               
ForsterA20260909         581 surfacings to 30m.
                                               
TasEastCoast20260922     791 surfacings to 30m.
                                               
Ceduna20260924           901 surfacings to 30m.
                                               
MissionBeach20261022     362 surfacings to 30m.
                                              
Groote_Eylandt20261027   56 surfacings to 30m.
                                             
TwoRocks20261028         1 surfacings to 30m.
saving /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1_c.mat
getting CARS
got it
        
Yearmaps
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_temp_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 97661 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 93382 data points in 2026
Ceduna20260924           has 90082 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
TwoRocks20261028         has 93 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
MissionBeach20261022     has 12687 data points in 2026
Groote_Eylandt20261027   has 4097 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_temp_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_tempa_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 97661 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 93382 data points in 2026
Ceduna20260924           has 90082 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
TwoRocks20261028         has 93 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
MissionBeach20261022     has 12687 data points in 2026
Groote_Eylandt20261027   has 4097 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_tempa_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psal_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 97661 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 93382 data points in 2026
Ceduna20260924           has 90082 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
TwoRocks20261028         has 93 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
MissionBeach20261022     has 12687 data points in 2026
Groote_Eylandt20261027   has 4097 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psal_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psala_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 97661 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 93382 data points in 2026
Ceduna20260924           has 90082 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
TwoRocks20261028         has 93 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
MissionBeach20261022     has 12687 data points in 2026
Groote_Eylandt20261027   has 4097 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psala_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_flu2_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 97661 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 93382 data points in 2026
Ceduna20260924           has 90082 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
TwoRocks20261028         has 93 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
MissionBeach20261022     has 12687 data points in 2026
Groote_Eylandt20261027   has 4097 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_flu2_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_doxy_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 97661 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 93382 data points in 2026
Ceduna20260924           has 90082 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
TwoRocks20261028         has 93 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
MissionBeach20261022     has 12687 data points in 2026
Groote_Eylandt20261027   has 4097 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_doxy_nrt.gif
                 
Mission T/S plots
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_MissionBeach20261022_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_Groote_Eylandt20261027_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_TwoRocks20261028_nrt.gif
                             
Mission map and section plots
                                                           
TwoRocks20261028         1 surfacings to 30m. Getting CARS:
got CARS profs
created /home/vamp1/pub_web/analysis/gliders/TwoRocks20261028_nrt_30d/
>>