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                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :59
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jf =
          2.00
pANFOG starting job nrt at 22-Sep-2026 12:20:13 on oc3-hba

ans =
    'sl2026_v1     '
doing 01-Jan-2025 00:00:00 to 31-Dec-2026 00:00:00 so finishing about 30-Sep-2026 12:04:26
gltypes =
  1x1 cell array
    {'slocum_glider'}
update from thredds?: 1
loaded data for 8 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1. Last10:
ForsterA20260909         60 22-Sep-2026 08:21:05 
TwoRocksA20260910        8 16-Sep-2026 14:22:16 
Forster20260909          115 10-Sep-2026 08:20:35 
TasEastCoast20260811     223 09-Sep-2026 12:20:59 
TwoRocks20260730         130 18-Aug-2026 18:20:58 
CapricornChannel20260723 121 10-Aug-2026 08:21:36 
Portland20250522         1 16-Jul-2026 15:48:02 
Esperance20260526        1 16-Jul-2026 15:47:46 
  folder       nfol datespan   nnow reading
catfile =
    'https://thredds.aodn.org.au/thredds/catalog/IMOS/ANFOG/REALTIME/slocum_glider/catalog.xml'
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc'}
                                                                             
22-Sep-2026 12:20:15 Found 1 .nc files in IMOS/ANFOG/REALTIME/Forster20260909
Forster20260909          had data til 09-Sep-2026 16:21:51
not checking for gap-filling files
found 1 uncached .nc files in timerange for Forster20260909
Forster20260909 1: 08-Sep-2026 - 10-Sep-2026 1: 08-Sep-2026 23:54:03 - 10-Sep-2026 00:34:47
had already: 115:  09-Sep-2026 00:03:33 - 09-Sep-2026 16:21:51
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc
max(julall)= 10-Sep-2026 00:34:47
length(julall)= 4690
range(find(cndci>2))= 2  4634
range(find(julall>maxjulj))= 3029  4690
2026-09-10T00:47:28Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
1605 1605 12      
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 162.343       165.201       205.777
expected 1605 records with 0>depth<3000 but found only 0 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Forster20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260910T003447Z.nc
slocum_glider Forster20260909          has 116 dives in area 153 153 -32.3 -32.2 during 09-Sep-2026 00:03:33 to 09-Sep-2026 16:21:51
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/ForsterA20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260921T230354Z.nc'}
                                                                              
22-Sep-2026 12:20:39 Found 1 .nc files in IMOS/ANFOG/REALTIME/ForsterA20260909
ForsterA20260909         had data til 21-Sep-2026 19:05:52
not checking for gap-filling files
found 1 uncached .nc files in timerange for ForsterA20260909
ForsterA20260909 1: 08-Sep-2026 - 21-Sep-2026 1: 08-Sep-2026 23:54:03 - 21-Sep-2026 23:03:54
had already: 60:  09-Sep-2026 00:03:33 - 21-Sep-2026 19:05:52
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/ForsterA20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260921T230354Z.nc
max(julall)= 21-Sep-2026 23:03:54
length(julall)= 63877
range(find(cndci>2))= 2  63795
range(find(julall>maxjulj))= 63186  63877
2026-09-22T01:35:35Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
609 608 71        
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 204.856       212.556       216.838
expected 609 records with 0>depth<3000 but found only 354 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/ForsterA20260909/IMOS_ANFOG_BCEOSTUV_20260908T235403Z_SL1212_FV00_timeseries_END-20260921T230354Z.nc
slocum_glider ForsterA20260909         has 61 dives in area 152 153 -33.2 -32.2 during 09-Sep-2026 00:03:33 to 21-Sep-2026 21:17:07
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260811/IMOS_ANFOG_BCEOSTUV_20260811T023336Z_SL287_FV00_timeseries_END-20260901T211524Z.nc'}
                                                                                  
22-Sep-2026 12:21:06 Found 1 .nc files in IMOS/ANFOG/REALTIME/TasEastCoast20260811
TasEastCoast20260811     had data til 01-Sep-2026 18:22:48
not checking for gap-filling files
found 1 uncached .nc files in timerange for TasEastCoast20260811
TasEastCoast20260811 1: 11-Aug-2026 - 01-Sep-2026 1: 11-Aug-2026 02:33:36 - 01-Sep-2026 21:15:24
had already: 223:  11-Aug-2026 02:53:16 - 01-Sep-2026 18:22:48
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260811/IMOS_ANFOG_BCEOSTUV_20260811T023336Z_SL287_FV00_timeseries_END-20260901T211524Z.nc
max(julall)= 01-Sep-2026 21:15:24
length(julall)= 102556
range(find(cndci>2))= 2  102537
range(find(julall>maxjulj))= 102036  102556
2026-09-01T21:35:36Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
502 502 165       
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 294.21        295.24        295.82
expected 502 records with 0>depth<3000 but found only 0 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260811/IMOS_ANFOG_BCEOSTUV_20260811T023336Z_SL287_FV00_timeseries_END-20260901T211524Z.nc
slocum_glider TasEastCoast20260811     has 224 dives in area 148 149 -42.6 -41.3 during 11-Aug-2026 02:53:16 to 01-Sep-2026 18:22:48
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260922/IMOS_ANFOG_BCEOSTUV_20260922T004118Z_SL287_FV00_timeseries_END-20260922T014423Z.nc'}
                                                                                  
22-Sep-2026 12:21:36 Found 1 .nc files in IMOS/ANFOG/REALTIME/TasEastCoast20260922
uncached mission detected:
TasEastCoast20260922      
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for TasEastCoast20260922
TasEastCoast20260922 1: 22-Sep-2026 - 22-Sep-2026 1: 22-Sep-2026 00:41:18 - 22-Sep-2026 01:44:23
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260922/IMOS_ANFOG_BCEOSTUV_20260922T004118Z_SL287_FV00_timeseries_END-20260922T014423Z.nc
max(julall)= 22-Sep-2026 01:44:23
length(julall)= 121
range(find(cndci>2))= 2  110
range(find(julall>maxjulj))= 1  121
2026-09-22T01:54:08Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
109 108 2         
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 305.09        305.64        306.49
expected 109 records with 0>depth<3000 but found only 94 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260922/IMOS_ANFOG_BCEOSTUV_20260922T004118Z_SL287_FV00_timeseries_END-20260922T014423Z.nc
slocum_glider TasEastCoast20260922     has 1 dives in area 148 148 -41.2 -41.2 during 22-Sep-2026 00:56:28 to 22-Sep-2026 01:23:14
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocksA20260910/IMOS_ANFOG_BCEOSTUV_20260910T062513Z_SL1227_FV00_timeseries_END-20260916T035749Z.nc'}
                                                                               
22-Sep-2026 12:21:57 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocksA20260910
TwoRocksA20260910        had data til 16-Sep-2026 03:15:21
not checking for gap-filling files
found 0 uncached .nc files in timerange for TwoRocksA20260910
TwoRocksA20260910 1: 10-Sep-2026 - 16-Sep-2026 0:  - 
had already: 8:  10-Sep-2026 06:31:53 - 16-Sep-2026 03:15:21
slocum_glider TwoRocksA20260910        had no new data in the time period
........
                                                                       
MISSING/RENAMED/REPROCESSED MISSIONS: (in the cache but not at thredds)
Esperance20260526       
Portland20250522        
CapricornChannel20260723
TwoRocks20260730        
        
summary:
cqOK=No_QC_performedGood_dataProbably_good_dataBad_data_that_are_potentially_correctableBad_dataValue_changedNot_used
ln -s -f /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1.mat /home/vamp1/varney/gri159/IMOScache/ANFOG/latest_nrt_sl.mat
calculating glider velocities
Esperance20260526        travelled 538 km
Portland20250522         travelled 1 km
CapricornChannel20260723 travelled 415 km
TwoRocks20260730         travelled 251 km
TasEastCoast20260811     travelled 429 km
Forster20260909          travelled 15 km
TwoRocksA20260910        travelled 101 km
ForsterA20260909         travelled 274 km
TasEastCoast20260922     travelled 0 km
saving glider velocities
                                                
Esperance20260526        1084 surfacings to 30m.
                                             
Portland20250522         2 surfacings to 30m.
                                               
CapricornChannel20260723 630 surfacings to 30m.
                                                
TwoRocks20260730         1232 surfacings to 30m.
                                               
TasEastCoast20260811     897 surfacings to 30m.
                                              
Forster20260909          30 surfacings to 30m.
                                               
TwoRocksA20260910        600 surfacings to 30m.
                                               
ForsterA20260909         394 surfacings to 30m.
                                             
TasEastCoast20260922     1 surfacings to 30m.
saving /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1_c.mat
getting CARS
got it
        
Yearmaps
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_temp_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 94 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 61848 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_temp_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_tempa_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 94 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 61848 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_tempa_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psal_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 94 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 61848 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psal_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psala_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 94 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 61848 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psala_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_flu2_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 94 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 61848 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_flu2_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_doxy_nrt.gif
TasEastCoast20260811     has 98380 data points in 2026
TasEastCoast20260922     has 94 data points in 2026
Esperance20260526        has 122964 data points in 2026
ForsterA20260909         has 61848 data points in 2026
Forster20260909          has 3012 data points in 2026
TwoRocksA20260910        has 27682 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_doxy_nrt.gif
                 
Mission T/S plots
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_ForsterA20260909_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_TasEastCoast20260922_nrt.gif
                             
Mission map and section plots
                                                           
TasEastCoast20260922     1 surfacings to 30m. Getting CARS:
got CARS profs
created /home/vamp1/pub_web/analysis/gliders/TasEastCoast20260922_nrt_30d/
>>