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                   R2018a (9.4.0.813654) 64-bit (glnxa64)
                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :59
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click here.] 
The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
jf =
          2.00
pANFOG starting job nrt at 26-Aug-2026 14:20:13 on oc3-hba

ans =
    'sl2026_v1     '
doing 01-Jan-2025 00:00:00 to 31-Dec-2026 00:00:00 so finishing about 03-Sep-2026 14:04:26
gltypes =
  1x1 cell array
    {'slocum_glider'}
update from thredds?: 1
loaded data for 5 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1. Last10:
TasEastCoast20260811     95 26-Aug-2026 12:20:42 
TwoRocks20260730         130 18-Aug-2026 18:20:58 
CapricornChannel20260723 121 10-Aug-2026 08:21:36 
Portland20250522         1 16-Jul-2026 15:48:02 
Esperance20260526        1 16-Jul-2026 15:47:46 
  folder       nfol datespan   nnow reading
catfile =
    'https://thredds.aodn.org.au/thredds/catalog/IMOS/ANFOG/REALTIME/slocum_glider/catalog.xml'
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Portland20250522/IMOS_ANFOG_BCEOSTUV_20250522T014642Z_SL287_FV00_timeseries_END-20250522T025759Z.nc'}
                                                                              
26-Aug-2026 14:20:14 Found 1 .nc files in IMOS/ANFOG/REALTIME/Portland20250522
Portland20250522         had data til 22-May-2025 02:57:59
not checking for gap-filling files
found 0 uncached .nc files in timerange for Portland20250522
Portland20250522 1: 22-May-2025 - 22-May-2025 0:  - 
had already: 1:  22-May-2025 01:59:59 - 22-May-2025 02:57:59
slocum_glider Portland20250522         had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260811/IMOS_ANFOG_BCEOSTUV_20260811T023336Z_SL287_FV00_timeseries_END-20260826T013841Z.nc'}
                                                                                  
26-Aug-2026 14:20:15 Found 1 .nc files in IMOS/ANFOG/REALTIME/TasEastCoast20260811
TasEastCoast20260811     had data til 25-Aug-2026 23:26:56
not checking for gap-filling files
found 1 uncached .nc files in timerange for TasEastCoast20260811
TasEastCoast20260811 1: 11-Aug-2026 - 26-Aug-2026 1: 11-Aug-2026 02:33:36 - 26-Aug-2026 01:38:41
had already: 95:  11-Aug-2026 02:53:16 - 25-Aug-2026 23:26:56
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260811/IMOS_ANFOG_BCEOSTUV_20260811T023336Z_SL287_FV00_timeseries_END-20260826T013841Z.nc
max(julall)= 26-Aug-2026 01:38:41
length(julall)= 70159
range(find(cndci>2))= 2  70155
range(find(julall>maxjulj))= 69845  70159
2026-08-26T01:55:47Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
311 310 111       
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 299.4        300.19        300.32
expected 311 records with 0>depth<3000 but found only 0 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/TasEastCoast20260811/IMOS_ANFOG_BCEOSTUV_20260811T023336Z_SL287_FV00_timeseries_END-20260826T013841Z.nc
slocum_glider TasEastCoast20260811     has 96 dives in area 148 149 -42.5 -41.3 during 11-Aug-2026 02:53:16 to 25-Aug-2026 23:26:56
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20260730/IMOS_ANFOG_BCEOSTUV_20260730T043303Z_SL248_FV00_timeseries_END-20260814T050109Z.nc'}
                                                                              
26-Aug-2026 14:20:45 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocks20260730
TwoRocks20260730         had data til 14-Aug-2026 04:59:34
not checking for gap-filling files
found 0 uncached .nc files in timerange for TwoRocks20260730
TwoRocks20260730 1: 30-Jul-2026 - 14-Aug-2026 0:  - 
had already: 130:  30-Jul-2026 04:43:48 - 14-Aug-2026 04:59:34
slocum_glider TwoRocks20260730         had no new data in the time period
                                                                       
MISSING/RENAMED/REPROCESSED MISSIONS: (in the cache but not at thredds)
Esperance20260526       
CapricornChannel20260723
        
summary:
cqOK=No_QC_performedGood_dataProbably_good_dataBad_data_that_are_potentially_correctableBad_dataValue_changedNot_used
ln -s -f /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1.mat /home/vamp1/varney/gri159/IMOScache/ANFOG/latest_nrt_sl.mat
calculating glider velocities
Esperance20260526        travelled 538 km
Portland20250522         travelled 1 km
CapricornChannel20260723 travelled 415 km
TwoRocks20260730         travelled 251 km
TasEastCoast20260811     travelled 305 km
saving glider velocities
                                                
Esperance20260526        1084 surfacings to 30m.
                                             
Portland20250522         2 surfacings to 30m.
                                               
CapricornChannel20260723 630 surfacings to 30m.
                                                
TwoRocks20260730         1232 surfacings to 30m.
                                               
TasEastCoast20260811     498 surfacings to 30m.
saving /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1_c.mat
getting CARS
got it
        
Yearmaps
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_temp_nrt.gif
TasEastCoast20260811     has 66217 data points in 2026
Esperance20260526        has 122964 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_temp_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_tempa_nrt.gif
TasEastCoast20260811     has 66217 data points in 2026
Esperance20260526        has 122964 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_tempa_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psal_nrt.gif
TasEastCoast20260811     has 66217 data points in 2026
Esperance20260526        has 122964 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psal_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psala_nrt.gif
TasEastCoast20260811     has 66217 data points in 2026
Esperance20260526        has 122964 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psala_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_flu2_nrt.gif
TasEastCoast20260811     has 66217 data points in 2026
Esperance20260526        has 122964 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_flu2_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_doxy_nrt.gif
TasEastCoast20260811     has 66217 data points in 2026
Esperance20260526        has 122964 data points in 2026
TwoRocks20260730         has 66351 data points in 2026
CapricornChannel20260723 has 78189 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_doxy_nrt.gif
                 
Mission T/S plots
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_TasEastCoast20260811_nrt.gif
                             
Mission map and section plots
                                                             
TasEastCoast20260811     498 surfacings to 30m. Getting CARS:
got CARS profs
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082600.gif
doing trajectories
took 0.024 mins, sum=0.024
parea3 =
        146.71        149.67        -43.42        -41.48
/home/vamp1/pub_web/analysis/gliders/navTasEastCoast20260811_nrt_30d/2026082600.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082512.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082500.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082412.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082400.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082312.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082300.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082212.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082200.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082112.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082100.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082012.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026082000.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081912.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081900.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081812.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081800.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081712.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081700.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081612.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/2026081600.gif
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

ls /home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_30d/*.gif
mfli =
    'TasEastCoast20260811_nrt_30d.fli'
/home/griffin/scripts/gifs2fliMC89.sh TasEastCoast20260811_nrt_30d.fli 250  2026081112.gif 2026081200.gif 2026081212.gif 2026081300.gif 2026081312.gif 2026081400.gif 2026081412.gif 2026081500.gif 2026081512.gif 2026081600.gif 2026081612.gif 2026081700.gif 2026081712.gif 2026081800.gif 2026081812.gif 2026081900.gif 2026081912.gif 2026082000.gif 2026082012.gif 2026082100.gif 2026082112.gif 2026082200.gif 2026082212.gif 2026082300.gif 2026082312.gif 2026082400.gif 2026082412.gif 2026082500.gif 2026082512.gif 2026082600.gif
/home/griffin/scripts/fli2videoMC.sh TasEastCoast20260811_nrt_30d.fli 4
ans =
    'TasEastCoast20260811_nrt_30d.fli'
\rm TasEastCoast20260811_nrt_30d/*.html
html_IMOS_gl TasEastCoast20260811_nrt_30d/
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

\rm navTasEastCoast20260811_nrt_30d/*.html
html_IMOS_gl navTasEastCoast20260811_nrt_30d/
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082600.gif
doing trajectories
took 0.015 mins, sum=0.04
parea3 =
        147.17        149.24        -43.14        -41.78
/home/vamp1/pub_web/analysis/gliders/navTasEastCoast20260811_nrt_12d/2026082600.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082512.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082500.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082412.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082400.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082312.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082300.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082212.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082200.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082112.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082100.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082012.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026082000.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081912.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081900.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081812.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081800.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081712.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081700.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081612.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/2026081600.gif
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

ls /home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_12d/*.gif
mfli =
    'TasEastCoast20260811_nrt_12d.fli'
/home/griffin/scripts/gifs2fliMC89.sh TasEastCoast20260811_nrt_12d.fli 250  2026081112.gif 2026081200.gif 2026081212.gif 2026081300.gif 2026081312.gif 2026081400.gif 2026081412.gif 2026081500.gif 2026081512.gif 2026081600.gif 2026081612.gif 2026081700.gif 2026081712.gif 2026081800.gif 2026081812.gif 2026081900.gif 2026081912.gif 2026082000.gif 2026082012.gif 2026082100.gif 2026082112.gif 2026082200.gif 2026082212.gif 2026082300.gif 2026082312.gif 2026082400.gif 2026082412.gif 2026082500.gif 2026082512.gif 2026082600.gif
/home/griffin/scripts/fli2videoMC.sh TasEastCoast20260811_nrt_12d.fli 4
ans =
    'TasEastCoast20260811_nrt_12d.fli'
\rm TasEastCoast20260811_nrt_12d/*.html
html_IMOS_gl TasEastCoast20260811_nrt_12d/
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

\rm navTasEastCoast20260811_nrt_12d/*.html
html_IMOS_gl navTasEastCoast20260811_nrt_12d/
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082600.gif
doing trajectories
took 0.0069 mins, sum=0.046
parea3 =
        147.79        148.68        -42.77        -42.18
/home/vamp1/pub_web/analysis/gliders/navTasEastCoast20260811_nrt_4d/2026082600.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082512.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082500.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082412.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082400.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082312.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082300.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082212.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082200.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082112.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082100.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082012.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026082000.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081912.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081900.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081812.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081800.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081712.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081700.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081612.gif
/home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/2026081600.gif
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

ls /home/vamp1/pub_web/analysis/gliders/TasEastCoast20260811_nrt_4d/*.gif
mfli =
    'TasEastCoast20260811_nrt_4d.fli'
/home/griffin/scripts/gifs2fliMC89.sh TasEastCoast20260811_nrt_4d.fli 250  2026081112.gif 2026081200.gif 2026081212.gif 2026081300.gif 2026081312.gif 2026081400.gif 2026081412.gif 2026081500.gif 2026081512.gif 2026081600.gif 2026081612.gif 2026081700.gif 2026081712.gif 2026081800.gif 2026081812.gif 2026081900.gif 2026081912.gif 2026082000.gif 2026082012.gif 2026082100.gif 2026082112.gif 2026082200.gif 2026082212.gif 2026082300.gif 2026082312.gif 2026082400.gif 2026082412.gif 2026082500.gif 2026082512.gif 2026082600.gif
/home/griffin/scripts/fli2videoMC.sh TasEastCoast20260811_nrt_4d.fli 4
ans =
    'TasEastCoast20260811_nrt_4d.fli'
\rm TasEastCoast20260811_nrt_4d/*.html
html_IMOS_gl TasEastCoast20260811_nrt_4d/
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

\rm navTasEastCoast20260811_nrt_4d/*.html
html_IMOS_gl navTasEastCoast20260811_nrt_4d/
ans =
             0
ls: cannot access '*.mp4': No such file or directory
ls: cannot access '*.fli': No such file or directory
rsync -av --password-file=$PWFILE --delete --timeout=480 gliders/  csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/gliders
rsync took 146s
job took 9mins
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202606*.html
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202606*.html
1 rm: cannot remove '/home/vamp1/intranet/cronlogs/DG/pANFOG/202606*.html': No such file or directory