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                   R2018a (9.4.0.813654) 64-bit (glnxa64)
                             February 23, 2018

 
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running startup.m for version
9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :59
[Warning: MATLAB has disabled some advanced graphics rendering features by
switching to software OpenGL. For more information, click here.] 
The state of warning 'MATLAB:interp1:NaNinY' is 'off'.
jf =
          2.00
pANFOG starting job nrt at 27-Jul-2026 18:20:13 on oc3-hba

ans =
    'sl2026_v1     '
doing 01-Jan-2025 00:00:00 to 31-Dec-2026 00:00:00 so finishing about 04-Aug-2026 18:04:26
gltypes =
  1x1 cell array
    {'slocum_glider'}
update from thredds?: 1
loaded data for 3 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1. Last10:
CapricornChannel20260723 33 27-Jul-2026 16:21:16 
Portland20250522         1 16-Jul-2026 15:48:02 
Esperance20260526        1 16-Jul-2026 15:47:46 
  folder       nfol datespan   nnow reading
catfile =
    'https://thredds.aodn.org.au/thredds/catalog/IMOS/ANFOG/REALTIME/slocum_glider/catalog.xml'
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/CapricornChannel20260723/IMOS_ANFOG_BCEOSTUV_20260723T032150Z_SL1212_FV00_timeseries_END-20260727T071455Z.nc'}
                                                                                      
27-Jul-2026 18:21:20 Found 1 .nc files in IMOS/ANFOG/REALTIME/CapricornChannel20260723
CapricornChannel20260723 had data til 27-Jul-2026 02:28:02
not checking for gap-filling files
found 1 uncached .nc files in timerange for CapricornChannel20260723
CapricornChannel20260723 1: 23-Jul-2026 - 27-Jul-2026 1: 23-Jul-2026 03:21:50 - 27-Jul-2026 07:14:55
had already: 33:  23-Jul-2026 03:30:05 - 27-Jul-2026 02:28:02
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/CapricornChannel20260723/IMOS_ANFOG_BCEOSTUV_20260723T032150Z_SL1212_FV00_timeseries_END-20260727T071455Z.nc
max(julall)= 27-Jul-2026 07:14:55
length(julall)= 17666
range(find(cndci>2))= 2  17572
range(find(julall>maxjulj))= 16736  17666
2026-07-27T07:33:03Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
836 835 43        
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 158.916        196.95       200.167
expected 836 records with 0>depth<3000 but found only 414 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/CapricornChannel20260723/IMOS_ANFOG_BCEOSTUV_20260723T032150Z_SL1212_FV00_timeseries_END-20260727T071455Z.nc
slocum_glider CapricornChannel20260723 has 34 dives in area 152 153 -23.4 -23 during 23-Jul-2026 03:30:05 to 27-Jul-2026 04:25:47
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Portland20250522/IMOS_ANFOG_BCEOSTUV_20250522T014642Z_SL287_FV00_timeseries_END-20250522T025759Z.nc'}
                                                                              
27-Jul-2026 18:21:43 Found 1 .nc files in IMOS/ANFOG/REALTIME/Portland20250522
Portland20250522         had data til 22-May-2025 02:57:59
not checking for gap-filling files
found 0 uncached .nc files in timerange for Portland20250522
Portland20250522 1: 22-May-2025 - 22-May-2025 0:  - 
had already: 1:  22-May-2025 01:59:59 - 22-May-2025 02:57:59
slocum_glider Portland20250522         had no new data in the time period
                                                                       
MISSING/RENAMED/REPROCESSED MISSIONS: (in the cache but not at thredds)
Esperance20260526       
        
summary:
cqOK=No_QC_performedGood_dataProbably_good_dataBad_data_that_are_potentially_correctableBad_dataValue_changedNot_used
ln -s -f /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1.mat /home/vamp1/varney/gri159/IMOScache/ANFOG/latest_nrt_sl.mat
calculating glider velocities
Esperance20260526        travelled 538 km
Portland20250522         travelled 1 km
CapricornChannel20260723 travelled 103 km
saving glider velocities
                                                
Esperance20260526        1084 surfacings to 30m.
                                             
Portland20250522         2 surfacings to 30m.
                                               
CapricornChannel20260723 152 surfacings to 30m.
saving /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2026_v1_c.mat
getting CARS
got it
        
Yearmaps
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_temp_nrt.gif
Esperance20260526        has 122964 data points in 2026
CapricornChannel20260723 has 17085 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_temp_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_tempa_nrt.gif
Esperance20260526        has 122964 data points in 2026
CapricornChannel20260723 has 17085 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_tempa_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psal_nrt.gif
Esperance20260526        has 122964 data points in 2026
CapricornChannel20260723 has 17085 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psal_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psala_nrt.gif
Esperance20260526        has 122964 data points in 2026
CapricornChannel20260723 has 17085 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_psala_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_flu2_nrt.gif
Esperance20260526        has 122964 data points in 2026
CapricornChannel20260723 has 17085 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_flu2_nrt.gif
Portland20250522         has 95 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_doxy_nrt.gif
Esperance20260526        has 122964 data points in 2026
CapricornChannel20260723 has 17085 data points in 2026
/home/vamp1/pub_web/analysis/gliders/yearmaps/2026_sl_doxy_nrt.gif
                 
Mission T/S plots
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_CapricornChannel20260723_nrt.gif
                             
Mission map and section plots
                                                             
CapricornChannel20260723 152 surfacings to 30m. Getting CARS:
got CARS profs
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072712.gif
doing trajectories
took 0.022 mins, sum=0.022
parea3 =
        151.48        153.95        -23.98        -21.95
/home/vamp1/pub_web/analysis/gliders/navCapricornChannel20260723_nrt_30d/2026072712.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072700.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072612.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072600.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072512.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072500.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072412.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072400.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/2026072312.gif
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

ls /home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_30d/*.gif
mfli =
    'CapricornChannel20260723_nrt_30d.fli'
/home/griffin/scripts/gifs2fliMC89.sh CapricornChannel20260723_nrt_30d.fli 250  2026072312.gif 2026072400.gif 2026072412.gif 2026072500.gif 2026072512.gif 2026072600.gif 2026072612.gif 2026072700.gif 2026072712.gif
/home/griffin/scripts/fli2videoMC.sh CapricornChannel20260723_nrt_30d.fli 4
ans =
    'CapricornChannel20260723_nrt_30d.fli'
\rm CapricornChannel20260723_nrt_30d/*.html
html_IMOS_gl CapricornChannel20260723_nrt_30d/
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

\rm navCapricornChannel20260723_nrt_30d/*.html
html_IMOS_gl navCapricornChannel20260723_nrt_30d/
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072712.gif
doing trajectories
took 0.013 mins, sum=0.036
parea3 =
        151.88        153.57        -23.69        -22.30
/home/vamp1/pub_web/analysis/gliders/navCapricornChannel20260723_nrt_12d/2026072712.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072700.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072612.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072600.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072512.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072500.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072412.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072400.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/2026072312.gif
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

ls /home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_12d/*.gif
mfli =
    'CapricornChannel20260723_nrt_12d.fli'
/home/griffin/scripts/gifs2fliMC89.sh CapricornChannel20260723_nrt_12d.fli 250  2026072312.gif 2026072400.gif 2026072412.gif 2026072500.gif 2026072512.gif 2026072600.gif 2026072612.gif 2026072700.gif 2026072712.gif
/home/griffin/scripts/fli2videoMC.sh CapricornChannel20260723_nrt_12d.fli 4
ans =
    'CapricornChannel20260723_nrt_12d.fli'
\rm CapricornChannel20260723_nrt_12d/*.html
html_IMOS_gl CapricornChannel20260723_nrt_12d/
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

\rm navCapricornChannel20260723_nrt_12d/*.html
html_IMOS_gl navCapricornChannel20260723_nrt_12d/
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072712.gif
doing trajectories
took 0.0071 mins, sum=0.043
parea3 =
        152.32        153.04        -23.30        -22.71
/home/vamp1/pub_web/analysis/gliders/navCapricornChannel20260723_nrt_4d/2026072712.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072700.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072612.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072600.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072512.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072500.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072412.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072400.gif
/home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/2026072312.gif
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

ls /home/vamp1/pub_web/analysis/gliders/CapricornChannel20260723_nrt_4d/*.gif
mfli =
    'CapricornChannel20260723_nrt_4d.fli'
/home/griffin/scripts/gifs2fliMC89.sh CapricornChannel20260723_nrt_4d.fli 250  2026072312.gif 2026072400.gif 2026072412.gif 2026072500.gif 2026072512.gif 2026072600.gif 2026072612.gif 2026072700.gif 2026072712.gif
/home/griffin/scripts/fli2videoMC.sh CapricornChannel20260723_nrt_4d.fli 4
ans =
    'CapricornChannel20260723_nrt_4d.fli'
\rm CapricornChannel20260723_nrt_4d/*.html
html_IMOS_gl CapricornChannel20260723_nrt_4d/
alltiftogif
alltiftogif
1 tiftogif_1map: No match.

\rm navCapricornChannel20260723_nrt_4d/*.html
html_IMOS_gl navCapricornChannel20260723_nrt_4d/
ans =
             0
ls: cannot access '*.mp4': No such file or directory
ls: cannot access '*.fli': No such file or directory
rsync -av --password-file=$PWFILE --delete --timeout=480 gliders/  csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/gliders
rsync took 114s
job took 6mins
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202605*.html
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202605*.html
1 rm: cannot remove '/home/vamp1/intranet/cronlogs/DG/pANFOG/202605*.html': No such file or directory