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                             February 23, 2018

 
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9.4.0.813654 (R2018a)
Assuming you have NOT paid for the stats toolbox, but have your own versions of things like range()
Display: :59
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jf =
          2.00
pANFOG starting job nrt at 11-Jul-2025 20:20:16 on oc3-hba

ans =
    'sl2025_v3  '
doing 01-Jan-2024 00:00:00 to 31-Dec-2025 00:00:00 so finishing about 19-Jul-2025 20:20:17
gltypes =
  1x1 cell array
    {'slocum_glider'}
update from thredds?: 1
initialising /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2025_v3
  folder       nfol datespan   nnow reading
catfile =
    'https://thredds.aodn.org.au/thredds/catalog/IMOS/ANFOG/REALTIME/slocum_glider/catalog.xml'
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Onslow20241119/IMOS_ANFOG_BCEOSTUV_20241119T012503Z_SL994_FV00_timeseries_END-20241211T000614Z.nc'}
                                                                            
11-Jul-2025 20:21:31 Found 1 .nc files in IMOS/ANFOG/REALTIME/Onslow20241119
uncached mission detected:
Onslow20241119            
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for Onslow20241119
Onslow20241119 1: 19-Nov-2024 - 11-Dec-2024 1: 19-Nov-2024 01:25:03 - 11-Dec-2024 00:06:14
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Onslow20241119/IMOS_ANFOG_BCEOSTUV_20241119T012503Z_SL994_FV00_timeseries_END-20241211T000614Z.nc
max(julall)= 11-Dec-2024 00:06:14
length(julall)= 41839
range(find(cndci>2))= 3  41839
range(find(julall>maxjulj))= 1  41839
2024-12-11T00:20:26Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
41837 41552 285   
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 146.747       186.187       196.857
expected 41837 records with 0>depth<3000 but found only 41256 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Onslow20241119/IMOS_ANFOG_BCEOSTUV_20241119T012503Z_SL994_FV00_timeseries_END-20241211T000614Z.nc
slocum_glider Onslow20241119 has 1 dives in area 114 115 -21.5 -20.7 during 19-Nov-2024 02:01:10 to 10-Dec-2024 23:23:05
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250129/IMOS_ANFOG_BCEOSTUV_20250129T061653Z_SL812_FV00_timeseries_END-20250130T135435Z.nc'}
                                                                            
11-Jul-2025 20:22:42 Found 1 .nc files in IMOS/ANFOG/REALTIME/Onslow20250129
uncached mission detected:
Onslow20250129            
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for Onslow20250129
Onslow20250129 1: 29-Jan-2025 - 30-Jan-2025 1: 29-Jan-2025 06:16:53 - 30-Jan-2025 13:54:35
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250129/IMOS_ANFOG_BCEOSTUV_20250129T061653Z_SL812_FV00_timeseries_END-20250130T135435Z.nc
max(julall)= 30-Jan-2025 13:54:35
length(julall)= 1541
range(find(cndci>2))= 2  1541
range(find(julall>maxjulj))= 1  1541
2025-01-30T15:46:17Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
1540 1517 24      
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 159.183       180.701       183.565
expected 1540 records with 0>depth<3000 but found only 1313 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250129/IMOS_ANFOG_BCEOSTUV_20250129T061653Z_SL812_FV00_timeseries_END-20250130T135435Z.nc
slocum_glider Onslow20250129 has 1 dives in area 115 115 -21.4 -21.3 during 29-Jan-2025 06:23:58 to 30-Jan-2025 08:53:39
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250225/IMOS_ANFOG_BCEOSTUV_20250225T013137Z_SL248_FV00_timeseries_END-20250319T043227Z.nc'}
                                                                            
11-Jul-2025 20:22:59 Found 1 .nc files in IMOS/ANFOG/REALTIME/Onslow20250225
uncached mission detected:
Onslow20250225            
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for Onslow20250225
Onslow20250225 1: 25-Feb-2025 - 19-Mar-2025 1: 25-Feb-2025 01:31:37 - 19-Mar-2025 04:32:27
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250225/IMOS_ANFOG_BCEOSTUV_20250225T013137Z_SL248_FV00_timeseries_END-20250319T043227Z.nc
max(julall)= 19-Mar-2025 04:32:27
length(julall)= 48412
range(find(cndci>2))= 2  48412
range(find(julall>maxjulj))= 1  48412
2025-03-19T04:49:09Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
48411 48135 276   
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 149.08        185.76        217.57
expected 48411 records with 0>depth<3000 but found only 48183 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250225/IMOS_ANFOG_BCEOSTUV_20250225T013137Z_SL248_FV00_timeseries_END-20250319T043227Z.nc
slocum_glider Onslow20250225 has 1 dives in area 114 115 -22.2 -21 during 25-Feb-2025 01:45:11 to 19-Mar-2025 03:58:04
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Portland20250522/IMOS_ANFOG_BCEOSTUV_20250522T014642Z_SL287_FV00_timeseries_END-20250522T025759Z.nc'}
                                                                              
11-Jul-2025 20:23:16 Found 1 .nc files in IMOS/ANFOG/REALTIME/Portland20250522
uncached mission detected:
Portland20250522          
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for Portland20250522
Portland20250522 1: 22-May-2025 - 22-May-2025 1: 22-May-2025 01:46:42 - 22-May-2025 02:57:59
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Portland20250522/IMOS_ANFOG_BCEOSTUV_20250522T014642Z_SL287_FV00_timeseries_END-20250522T025759Z.nc
max(julall)= 22-May-2025 02:57:59
length(julall)= 96
range(find(cndci>2))= 2  96
range(find(julall>maxjulj))= 1  96
2025-05-22T07:33:23Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
95 94 2           
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 371.07        372.05        372.83
slocum_glider Portland20250522 has 1 dives in area 141 141 -38.3 -38.3 during 22-May-2025 01:59:59 to 22-May-2025 02:57:59
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250219/IMOS_ANFOG_BCEOSTUV_20250219T052938Z_SL227_FV00_timeseries_END-20250316T210929Z.nc'}
                                                                              
11-Jul-2025 20:23:32 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocks20250219
uncached mission detected:
TwoRocks20250219          
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for TwoRocks20250219
TwoRocks20250219 1: 19-Feb-2025 - 16-Mar-2025 1: 19-Feb-2025 05:29:38 - 16-Mar-2025 21:09:29
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250219/IMOS_ANFOG_BCEOSTUV_20250219T052938Z_SL227_FV00_timeseries_END-20250316T210929Z.nc
max(julall)= 16-Mar-2025 21:09:29
length(julall)= 54536
range(find(cndci>2))= 2  54468
range(find(julall>maxjulj))= 1  54536
2025-03-16T23:03:59Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
54467 54204 284   
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 195.608       205.661       228.586
expected 54467 records with 0>depth<3000 but found only 54044 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250219/IMOS_ANFOG_BCEOSTUV_20250219T052938Z_SL227_FV00_timeseries_END-20250316T210929Z.nc
slocum_glider TwoRocks20250219 has 1 dives in area 115 116 -31.9 -31.1 during 19-Feb-2025 05:36:58 to 15-Mar-2025 04:16:53
........
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250515/IMOS_ANFOG_BCEOSTUV_20250515T073809Z_SL812_FV00_timeseries_END-20250518T070709Z.nc'}
                                                                              
11-Jul-2025 20:23:50 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocks20250515
uncached mission detected:
TwoRocks20250515          
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for TwoRocks20250515
TwoRocks20250515 1: 15-May-2025 - 18-May-2025 1: 15-May-2025 07:38:09 - 18-May-2025 07:07:09
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250515/IMOS_ANFOG_BCEOSTUV_20250515T073809Z_SL812_FV00_timeseries_END-20250518T070709Z.nc
max(julall)= 18-May-2025 07:07:09
length(julall)= 5460
range(find(cndci>2))= 2  5460
range(find(julall>maxjulj))= 1  5460
2025-05-18T07:33:14Z Written by MATLAB script sl_netcdfRT.m v5.
stride=1
nwant ngaps  ngood
5459 5411 48      
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 192.172       201.145       205.411
expected 5459 records with 0>depth<3000 but found only 5393 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250515/IMOS_ANFOG_BCEOSTUV_20250515T073809Z_SL812_FV00_timeseries_END-20250518T070709Z.nc
slocum_glider TwoRocks20250515 has 1 dives in area 115 116 -31.9 -31.6 during 15-May-2025 07:45:16 to 18-May-2025 06:16:25
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Yamba20241113/IMOS_ANFOG_BCEOSTUV_20241113T020013Z_SL995_FV00_timeseries_END-20241127T223327Z.nc'}
                                                                           
11-Jul-2025 20:24:06 Found 1 .nc files in IMOS/ANFOG/REALTIME/Yamba20241113
uncached mission detected:
Yamba20241113             
                          
not checking for gap-filling files
found 1 uncached .nc files in timerange for Yamba20241113
Yamba20241113 1: 13-Nov-2024 - 27-Nov-2024 1: 13-Nov-2024 02:00:13 - 27-Nov-2024 22:33:27
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/Yamba20241113/IMOS_ANFOG_BCEOSTUV_20241113T020013Z_SL995_FV00_timeseries_END-20241127T223327Z.nc
max(julall)= 27-Nov-2024 22:33:27
length(julall)= 35236
range(find(cndci>2))= 2  35236
range(find(julall>maxjulj))= 1  35236
2024-11-28T04:52:38Z Written by MATLAB script sl_netcdfRT.m v5. 2025-01-08T13:26:00Z Corrected title to show correct mission name
stride=1
nwant ngaps  ngood
35235 35048 188   
WARNING: Failed trying to access variable: UCUR_GPS
WARNING: Failed trying to access variable: HEAD
5,50,95 DOX1= 166.989        194.41        213.34
expected 35235 records with 0>depth<3000 but found only 34958 in https://thredds.aodn.org.au/thredds/dodsC/IMOS/ANFOG/REALTIME/slocum_glider/Yamba20241113/IMOS_ANFOG_BCEOSTUV_20241113T020013Z_SL995_FV00_timeseries_END-20241127T223327Z.nc
slocum_glider Yamba20241113    has 1 dives in area 153 154 -32.1 -29.4 during 13-Nov-2024 02:07:41 to 27-Nov-2024 22:13:25
        
summary:
slocum_glider Onslow20241119   has 1 dives in area 114 115 -21.5 -20.7 during 19-Nov-2024 02:01:10 to 10-Dec-2024 23:23:05
slocum_glider Onslow20250129   has 1 dives in area 115 115 -21.4 -21.3 during 29-Jan-2025 06:23:58 to 30-Jan-2025 08:53:39
slocum_glider Onslow20250225   has 1 dives in area 114 115 -22.2 -21 during 25-Feb-2025 01:45:11 to 19-Mar-2025 03:58:04
slocum_glider Portland20250522 has 1 dives in area 141 141 -38.3 -38.3 during 22-May-2025 01:59:59 to 22-May-2025 02:57:59
slocum_glider TwoRocks20250219 has 1 dives in area 115 116 -31.9 -31.1 during 19-Feb-2025 05:36:58 to 15-Mar-2025 04:16:53
slocum_glider TwoRocks20250515 has 1 dives in area 115 116 -31.9 -31.6 during 15-May-2025 07:45:16 to 18-May-2025 06:16:25
slocum_glider Yamba20241113    has 1 dives in area 153 154 -32.1 -29.4 during 13-Nov-2024 02:07:41 to 27-Nov-2024 22:13:25
cqOK=No_QC_performedGood_dataProbably_good_dataBad_data_that_are_potentially_correctableBad_dataValue_changedNot_used
ln -s -f /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2025_v3.mat /home/vamp1/varney/gri159/IMOScache/ANFOG/latest_nrt_sl.mat
calculating glider velocities
Onslow20241119   travelled 361 km
Onslow20250129   travelled 21 km
Onslow20250225   travelled 400 km
Portland20250522 travelled 1 km
TwoRocks20250219 travelled 524 km
TwoRocks20250515 travelled 78 km
Yamba20241113    travelled 440 km
saving glider velocities
                                       
Onslow20241119   564 surfacings to 30m.
                                      
Onslow20250129   46 surfacings to 30m.
                                       
Onslow20250225   378 surfacings to 30m.
                                     
Portland20250522 2 surfacings to 30m.
                                        
TwoRocks20250219 1920 surfacings to 30m.
                                       
TwoRocks20250515 253 surfacings to 30m.
                                       
Yamba20241113    788 surfacings to 30m.
saving /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2025_v3_c.mat
getting CARS
got it
        
Yearmaps
Yamba20241113    has 34958 data points in 2024
Onslow20241119   has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_temp_nrt.gif
Portland20250522 has 95 data points in 2025
TwoRocks20250219 has 54044 data points in 2025
TwoRocks20250515 has 5393 data points in 2025
Onslow20250129   has 1313 data points in 2025
Onslow20250225   has 48183 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_temp_nrt.gif
Yamba20241113    has 34958 data points in 2024
Onslow20241119   has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_tempa_nrt.gif
Portland20250522 has 95 data points in 2025
TwoRocks20250219 has 54044 data points in 2025
TwoRocks20250515 has 5393 data points in 2025
Onslow20250129   has 1313 data points in 2025
Onslow20250225   has 48183 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_tempa_nrt.gif
Yamba20241113    has 34958 data points in 2024
Onslow20241119   has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_psal_nrt.gif
Portland20250522 has 95 data points in 2025
TwoRocks20250219 has 54044 data points in 2025
TwoRocks20250515 has 5393 data points in 2025
Onslow20250129   has 1313 data points in 2025
Onslow20250225   has 48183 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psal_nrt.gif
Yamba20241113    has 34958 data points in 2024
Onslow20241119   has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_psala_nrt.gif
Portland20250522 has 95 data points in 2025
TwoRocks20250219 has 54044 data points in 2025
TwoRocks20250515 has 5393 data points in 2025
Onslow20250129   has 1313 data points in 2025
Onslow20250225   has 48183 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psala_nrt.gif
Yamba20241113    has 34958 data points in 2024
Onslow20241119   has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_flu2_nrt.gif
Portland20250522 has 95 data points in 2025
TwoRocks20250219 has 54044 data points in 2025
TwoRocks20250515 has 5393 data points in 2025
Onslow20250129   has 1313 data points in 2025
Onslow20250225   has 48183 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_flu2_nrt.gif
Yamba20241113    has 34958 data points in 2024
Onslow20241119   has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_doxy_nrt.gif
Portland20250522 has 95 data points in 2025
TwoRocks20250219 has 54044 data points in 2025
TwoRocks20250515 has 5393 data points in 2025
Onslow20250129   has 1313 data points in 2025
Onslow20250225   has 48183 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_doxy_nrt.gif
                 
Mission T/S plots
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_Onslow20241119_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_Onslow20250129_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_Onslow20250225_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_Portland20250522_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_TwoRocks20250219_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_TwoRocks20250515_nrt.gif
/home/vamp1/pub_web/analysis/gliders/missionTS/sl_Yamba20241113_nrt.gif
                             
Mission map and section plots
ans =
             0
ls: cannot access '*.mp4': No such file or directory
ls: cannot access '*.fli': No such file or directory
rsync -av --password-file=$PWFILE --delete --timeout=480 gliders/  csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/gliders
rsync took 315s
job took 11mins
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202505*.html
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202505*.html
1 rm: cannot remove '/home/vamp1/intranet/cronlogs/DG/pANFOG/202505*.html': No such file or directory