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jf =
          2.00
pANFOG starting job nrt at 01-Jul-2025 14:20:13 on oc3-hba

ans =
    'sl2025_v2  '
doing 01-Jan-2024 00:00:00 to 31-Dec-2025 00:00:00 so finishing about 09-Jul-2025 14:20:14
gltypes =
  1x1 cell array
    {'slocum_glider'}
update from thredds?: 1
loaded data for 18 missions from /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2025_v2. Last10:
PortLincoln20250529  152 17-Jun-2025 10:21:03 
TwoRocks20250515     1 24-May-2025 06:21:22 
Portland20250522     1 22-May-2025 18:21:21 
Forster20250507      194 02-Jun-2025 12:21:17 
BassStrait20250501   141 19-May-2025 08:20:58 
Ningaloo20250402     110 16-Apr-2025 10:21:03 
Esperance20250327    110 10-Apr-2025 10:21:02 
Portland20250312     134 02-Apr-2025 10:21:13 
Onslow20250225       176 19-Mar-2025 16:21:13 
Forster20250225      84 09-Mar-2025 14:20:49 
TwoRocks20250219     1161 15-Mar-2025 18:21:49 
  folder       nfol datespan   nnow reading
catfile =
    'https://thredds.aodn.org.au/thredds/catalog/IMOS/ANFOG/REALTIME/slocum_glider/catalog.xml'
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Forster20250507/IMOS_ANFOG_BCEOSTUV_20250506T231155Z_SL248_FV00_timeseries_END-20250601T230011Z.nc'}
                                                                             
01-Jul-2025 14:20:51 Found 1 .nc files in IMOS/ANFOG/REALTIME/Forster20250507
Forster20250507      had data til 01-Jun-2025 22:30:44
not checking for gap-filling files
found 0 uncached .nc files in timerange for Forster20250507
Forster20250507 1: 06-May-2025 - 01-Jun-2025 0:  - 
had already: 194:  06-May-2025 23:22:38 - 01-Jun-2025 22:30:44
slocum_glider Forster20250507      had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Onslow20241119/IMOS_ANFOG_BCEOSTUV_20241119T012503Z_SL994_FV00_timeseries_END-20241211T000614Z.nc'}
                                                                            
01-Jul-2025 14:20:51 Found 1 .nc files in IMOS/ANFOG/REALTIME/Onslow20241119
Onslow20241119       had data til 10-Dec-2024 23:23:05
not checking for gap-filling files
found 0 uncached .nc files in timerange for Onslow20241119
Onslow20241119 1: 19-Nov-2024 - 11-Dec-2024 0:  - 
had already: 1:  19-Nov-2024 02:01:10 - 10-Dec-2024 23:23:05
slocum_glider Onslow20241119       had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250129/IMOS_ANFOG_BCEOSTUV_20250129T061653Z_SL812_FV00_timeseries_END-20250130T135435Z.nc'}
                                                                            
01-Jul-2025 14:20:52 Found 1 .nc files in IMOS/ANFOG/REALTIME/Onslow20250129
Onslow20250129       had data til 18-May-2025 06:16:25
not checking for gap-filling files
found 0 uncached .nc files in timerange for Onslow20250129
Onslow20250129 1: 29-Jan-2025 - 30-Jan-2025 0:  - 
had already: 637:  29-Jan-2025 06:23:58 - 18-May-2025 06:16:25
slocum_glider Onslow20250129       had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Onslow20250225/IMOS_ANFOG_BCEOSTUV_20250225T013137Z_SL248_FV00_timeseries_END-20250319T043227Z.nc'}
                                                                            
01-Jul-2025 14:20:52 Found 1 .nc files in IMOS/ANFOG/REALTIME/Onslow20250225
Onslow20250225       had data til 19-Mar-2025 03:58:04
not checking for gap-filling files
found 0 uncached .nc files in timerange for Onslow20250225
Onslow20250225 1: 25-Feb-2025 - 19-Mar-2025 0:  - 
had already: 176:  25-Feb-2025 01:45:11 - 19-Mar-2025 03:58:04
slocum_glider Onslow20250225       had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/PortLincoln20250529/IMOS_ANFOG_BCEOSTUV_20250529T022639Z_SL227_FV00_timeseries_END-20250617T005027Z.nc'}
                                                                                 
01-Jul-2025 14:20:52 Found 1 .nc files in IMOS/ANFOG/REALTIME/PortLincoln20250529
PortLincoln20250529  had data til 16-Jun-2025 23:50:17
not checking for gap-filling files
found 0 uncached .nc files in timerange for PortLincoln20250529
PortLincoln20250529 1: 29-May-2025 - 17-Jun-2025 0:  - 
had already: 152:  29-May-2025 02:35:21 - 16-Jun-2025 23:50:17
slocum_glider PortLincoln20250529  had no new data in the time period
........
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Portland20250522/IMOS_ANFOG_BCEOSTUV_20250522T014642Z_SL287_FV00_timeseries_END-20250522T025759Z.nc'}
                                                                              
01-Jul-2025 14:20:53 Found 1 .nc files in IMOS/ANFOG/REALTIME/Portland20250522
Portland20250522     had data til 22-May-2025 02:57:59
not checking for gap-filling files
found 0 uncached .nc files in timerange for Portland20250522
Portland20250522 1: 22-May-2025 - 22-May-2025 0:  - 
had already: 1:  22-May-2025 01:59:59 - 22-May-2025 02:57:59
slocum_glider Portland20250522     had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250219/IMOS_ANFOG_BCEOSTUV_20250219T052938Z_SL227_FV00_timeseries_END-20250316T210929Z.nc'}
                                                                              
01-Jul-2025 14:20:53 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocks20250219
TwoRocks20250219     had data til 15-Mar-2025 04:16:53
not checking for gap-filling files
found 1 uncached .nc files in timerange for TwoRocks20250219
TwoRocks20250219 1: 19-Feb-2025 - 16-Mar-2025 1: 19-Feb-2025 05:29:38 - 16-Mar-2025 21:09:29
had already: 1161:  19-Feb-2025 05:36:58 - 15-Mar-2025 04:16:53
reading file 1 of 1 IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250219/IMOS_ANFOG_BCEOSTUV_20250219T052938Z_SL227_FV00_timeseries_END-20250316T210929Z.nc
max(julall)= 16-Mar-2025 21:09:29
length(julall)= 54536
range(find(cndci>2))= 2  54468
range(find(julall>maxjulj))= 54469  54536
slocum_glider TwoRocks20250219     has 1162 dives in area 115 116 -31.9 -31.1 during 19-Feb-2025 05:36:58 to 15-Mar-2025 04:16:53
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/TwoRocks20250515/IMOS_ANFOG_BCEOSTUV_20250515T073809Z_SL812_FV00_timeseries_END-20250518T070709Z.nc'}
                                                                              
01-Jul-2025 14:20:56 Found 1 .nc files in IMOS/ANFOG/REALTIME/TwoRocks20250515
TwoRocks20250515     had data til 18-May-2025 06:16:25
not checking for gap-filling files
found 0 uncached .nc files in timerange for TwoRocks20250515
TwoRocks20250515 1: 15-May-2025 - 18-May-2025 0:  - 
had already: 1:  15-May-2025 07:45:16 - 18-May-2025 06:16:25
slocum_glider TwoRocks20250515     had no new data in the time period
file_list =
  1x1 cell array
    {'IMOS/ANFOG/REALTIME/slocum_glider/Yamba20241113/IMOS_ANFOG_BCEOSTUV_20241113T020013Z_SL995_FV00_timeseries_END-20241127T223327Z.nc'}
                                                                           
01-Jul-2025 14:20:56 Found 1 .nc files in IMOS/ANFOG/REALTIME/Yamba20241113
Yamba20241113        had data til 27-Nov-2024 22:13:25
not checking for gap-filling files
found 0 uncached .nc files in timerange for Yamba20241113
Yamba20241113 1: 13-Nov-2024 - 27-Nov-2024 0:  - 
had already: 1:  13-Nov-2024 02:07:41 - 27-Nov-2024 22:13:25
slocum_glider Yamba20241113        had no new data in the time period
                                                                       
MISSING/RENAMED/REPROCESSED MISSIONS: (in the cache but not at thredds)
Forster20241128     
MissionBeach20250110
TwoRocks20250123    
Ningaloo20250129    
Forster20250225     
Portland20250312    
Esperance20250327   
Ningaloo20250402    
BassStrait20250501  
        
summary:
slocum_glider Forster20241128      has 1 dives in area 153 153 -32.2 -32.1 during 28-Nov-2024 01:03:42 to 03-Dec-2024 20:12:02
slocum_glider MissionBeach20250110 has 130 dives in area 146 147 -18.2 -16.5 during 10-Jan-2025 01:33:49 to 11-Feb-2025 00:00:42
slocum_glider Onslow20241119       has 1 dives in area 114 115 -21.5 -20.7 during 19-Nov-2024 02:01:10 to 10-Dec-2024 23:23:05
slocum_glider TwoRocks20250123     has 183 dives in area 114 116 -31.9 -30.6 during 23-Jan-2025 07:11:43 to 18-Feb-2025 21:46:48
slocum_glider Yamba20241113        has 1 dives in area 153 154 -32.1 -29.4 during 13-Nov-2024 02:07:41 to 27-Nov-2024 22:13:25
slocum_glider Ningaloo20250129     has 58 dives in area 114 115 -22.2 -21.3 during 29-Jan-2025 04:47:21 to 05-Feb-2025 05:34:01
slocum_glider Onslow20250129       has 637 dives in area 115 116 -31.9 -21.3 during 29-Jan-2025 06:23:58 to 18-May-2025 06:16:25
slocum_glider TwoRocks20250219     has 1162 dives in area 115 116 -31.9 -31.1 during 19-Feb-2025 05:36:58 to 15-Mar-2025 04:16:53
slocum_glider Forster20250225      has 84 dives in area 152 153 -33.4 -32.2 during 24-Feb-2025 23:59:27 to 09-Mar-2025 01:02:44
slocum_glider Onslow20250225       has 176 dives in area 114 115 -22.2 -21 during 25-Feb-2025 01:45:11 to 19-Mar-2025 03:58:04
slocum_glider Portland20250312     has 134 dives in area 140 142 -38.7 -38.1 during 12-Mar-2025 00:38:27 to 01-Apr-2025 22:15:17
slocum_glider Esperance20250327    has 110 dives in area 122 123 -34.7 -34.2 during 27-Mar-2025 02:38:45 to 09-Apr-2025 23:07:22
slocum_glider Ningaloo20250402     has 110 dives in area 114 114 -22.3 -21.7 during 02-Apr-2025 04:00:36 to 15-Apr-2025 22:38:54
slocum_glider BassStrait20250501   has 141 dives in area 147 147 -41 -39.4 during 01-May-2025 06:18:27 to 18-May-2025 21:24:54
slocum_glider Forster20250507      has 194 dives in area 152 153 -33.2 -32.2 during 06-May-2025 23:22:38 to 01-Jun-2025 22:30:44
slocum_glider Portland20250522     has 1 dives in area 141 141 -38.3 -38.3 during 22-May-2025 01:59:59 to 22-May-2025 02:57:59
slocum_glider TwoRocks20250515     has 1 dives in area 115 116 -31.9 -31.6 during 15-May-2025 07:45:16 to 18-May-2025 06:16:25
slocum_glider PortLincoln20250529  has 152 dives in area 136 137 -36 -34.8 during 29-May-2025 02:35:21 to 16-Jun-2025 23:50:17
ln -s -f /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2025_v2.mat /home/vamp1/varney/gri159/IMOScache/ANFOG/latest_nrt_sl.mat
calculating glider velocities
Forster20241128      travelled 87 km
MissionBeach20250110 travelled 550 km
Onslow20241119       travelled 361 km
TwoRocks20250123     travelled 554 km
Yamba20241113        travelled 440 km
Ningaloo20250129     travelled 175 km
Onslow20250129       travelled 1277 km
TwoRocks20250219     travelled 524 km
Forster20250225      travelled 399 km
Onslow20250225       travelled 399 km
Portland20250312     travelled 391 km
Esperance20250327    travelled 315 km
Ningaloo20250402     travelled 238 km
BassStrait20250501   travelled 445 km
Forster20250507      travelled 452 km
Portland20250522     travelled 1 km
TwoRocks20250515     travelled 78 km
PortLincoln20250529  travelled 443 km
saving glider velocities
                                           
Forster20241128      542 surfacings to 30m.
                                            
MissionBeach20250110 1364 surfacings to 30m.
                                           
Onslow20241119       564 surfacings to 30m.
                                            
TwoRocks20250123     1464 surfacings to 30m.
                                           
Yamba20241113        788 surfacings to 30m.
                                           
Ningaloo20250129     224 surfacings to 30m.
                                           
Onslow20250129       300 surfacings to 30m.
                                            
TwoRocks20250219     1908 surfacings to 30m.
                                           
Forster20250225      536 surfacings to 30m.
                                           
Onslow20250225       376 surfacings to 30m.
                                           
Portland20250312     718 surfacings to 30m.
                                           
Esperance20250327    514 surfacings to 30m.
                                           
Ningaloo20250402     270 surfacings to 30m.
                                           
BassStrait20250501   848 surfacings to 30m.
                                            
Forster20250507      1064 surfacings to 30m.
                                         
Portland20250522     2 surfacings to 30m.
                                           
TwoRocks20250515     253 surfacings to 30m.
                                            
PortLincoln20250529  1012 surfacings to 30m.
saving /home/vamp1/varney/gri159/IMOScache/ANFOG/sl2025_v2_c.mat
getting CARS
got it
        
Yearmaps
Forster20241128      has 11169 data points in 2024
Yamba20241113        has 34958 data points in 2024
Onslow20241119       has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_temp_nrt.gif
BassStrait20250501   has 36011 data points in 2025
Portland20250312     has 34102 data points in 2025
Portland20250522     has 95 data points in 2025
PortLincoln20250529  has 38631 data points in 2025
Esperance20250327    has 23126 data points in 2025
Forster20250225      has 25932 data points in 2025
Forster20250507      has 55565 data points in 2025
TwoRocks20250123     has 47148 data points in 2025
TwoRocks20250219     has 53670 data points in 2025
TwoRocks20250515     has 5393 data points in 2025
Onslow20250129       has 6706 data points in 2025
Onslow20250225       has 47932 data points in 2025
Ningaloo20250129     has 11226 data points in 2025
Ningaloo20250402     has 29571 data points in 2025
MissionBeach20250110 has 48055 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_temp_nrt.gif
Forster20241128      has 11169 data points in 2024
Yamba20241113        has 34958 data points in 2024
Onslow20241119       has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_tempa_nrt.gif
BassStrait20250501   has 36011 data points in 2025
Portland20250312     has 34102 data points in 2025
Portland20250522     has 95 data points in 2025
PortLincoln20250529  has 38631 data points in 2025
Esperance20250327    has 23126 data points in 2025
Forster20250225      has 25932 data points in 2025
Forster20250507      has 55565 data points in 2025
TwoRocks20250123     has 47148 data points in 2025
TwoRocks20250219     has 53670 data points in 2025
TwoRocks20250515     has 5393 data points in 2025
Onslow20250129       has 6706 data points in 2025
Onslow20250225       has 47932 data points in 2025
Ningaloo20250129     has 11226 data points in 2025
Ningaloo20250402     has 29571 data points in 2025
MissionBeach20250110 has 48055 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_tempa_nrt.gif
Forster20241128      has 11169 data points in 2024
Yamba20241113        has 34958 data points in 2024
Onslow20241119       has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_psal_nrt.gif
BassStrait20250501   has 36011 data points in 2025
Portland20250312     has 34102 data points in 2025
Portland20250522     has 95 data points in 2025
PortLincoln20250529  has 38631 data points in 2025
Esperance20250327    has 23126 data points in 2025
Forster20250225      has 25932 data points in 2025
Forster20250507      has 55565 data points in 2025
TwoRocks20250123     has 47148 data points in 2025
TwoRocks20250219     has 53670 data points in 2025
TwoRocks20250515     has 5393 data points in 2025
Onslow20250129       has 6706 data points in 2025
Onslow20250225       has 47932 data points in 2025
Ningaloo20250129     has 11226 data points in 2025
Ningaloo20250402     has 29571 data points in 2025
MissionBeach20250110 has 48055 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psal_nrt.gif
Forster20241128      has 11169 data points in 2024
Yamba20241113        has 34958 data points in 2024
Onslow20241119       has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_psala_nrt.gif
BassStrait20250501   has 36011 data points in 2025
Portland20250312     has 34102 data points in 2025
Portland20250522     has 95 data points in 2025
PortLincoln20250529  has 38631 data points in 2025
Esperance20250327    has 23126 data points in 2025
Forster20250225      has 25932 data points in 2025
Forster20250507      has 55565 data points in 2025
TwoRocks20250123     has 47148 data points in 2025
TwoRocks20250219     has 53670 data points in 2025
TwoRocks20250515     has 5393 data points in 2025
Onslow20250129       has 6706 data points in 2025
Onslow20250225       has 47932 data points in 2025
Ningaloo20250129     has 11226 data points in 2025
Ningaloo20250402     has 29571 data points in 2025
MissionBeach20250110 has 48055 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_psala_nrt.gif
Forster20241128      has 11169 data points in 2024
Yamba20241113        has 34958 data points in 2024
Onslow20241119       has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_flu2_nrt.gif
BassStrait20250501   has 36011 data points in 2025
Portland20250312     has 34102 data points in 2025
Portland20250522     has 95 data points in 2025
PortLincoln20250529  has 38631 data points in 2025
Esperance20250327    has 23126 data points in 2025
Forster20250225      has 25932 data points in 2025
Forster20250507      has 55565 data points in 2025
TwoRocks20250123     has 47148 data points in 2025
TwoRocks20250219     has 53670 data points in 2025
TwoRocks20250515     has 5393 data points in 2025
Onslow20250129       has 6706 data points in 2025
Onslow20250225       has 47932 data points in 2025
Ningaloo20250129     has 11226 data points in 2025
Ningaloo20250402     has 29571 data points in 2025
MissionBeach20250110 has 48055 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_flu2_nrt.gif
Forster20241128      has 11169 data points in 2024
Yamba20241113        has 34958 data points in 2024
Onslow20241119       has 41256 data points in 2024
/home/vamp1/pub_web/analysis/gliders/yearmaps/2024_sl_doxy_nrt.gif
BassStrait20250501   has 36011 data points in 2025
Portland20250312     has 34102 data points in 2025
Portland20250522     has 95 data points in 2025
PortLincoln20250529  has 38631 data points in 2025
Esperance20250327    has 23126 data points in 2025
Forster20250225      has 25932 data points in 2025
Forster20250507      has 55565 data points in 2025
TwoRocks20250123     has 47148 data points in 2025
TwoRocks20250219     has 53670 data points in 2025
TwoRocks20250515     has 5393 data points in 2025
Onslow20250129       has 6706 data points in 2025
Onslow20250225       has 47932 data points in 2025
Ningaloo20250129     has 11226 data points in 2025
Ningaloo20250402     has 29571 data points in 2025
MissionBeach20250110 has 48055 data points in 2025
/home/vamp1/pub_web/analysis/gliders/yearmaps/2025_sl_doxy_nrt.gif
                 
Mission T/S plots
                             
Mission map and section plots
ans =
             0
ls: cannot access '*.mp4': No such file or directory
ls: cannot access '*.fli': No such file or directory
rsync -av --password-file=$PWFILE --delete --timeout=480 gliders/  csiro_website@oceancurrent.aodn.org.au::oceancurrent_website/gliders
rsync took 98s
job took 5mins
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202504*.html
\rm /home/vamp1/intranet/cronlogs/DG/pANFOG/202504*.html
1 rm: cannot remove '/home/vamp1/intranet/cronlogs/DG/pANFOG/202504*.html': No such file or directory